nrdD:Quickview: Difference between revisions
Jump to navigation
Jump to search
Update TableEdit tables. |
touch |
||
| (8 intermediate revisions by the same user not shown) | |||
| Line 23: | Line 23: | ||
* ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | ||
* | * | ||
****************************************************************************************** --> | ****************************************************************************************** --> | ||
{| | {| id="W49aeee4adeb59" class=" tableEdit New_Quickview_Table" | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Standard Name | ||
|| | || | ||
''nrdD'' | ''nrdD'' | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
|| | || | ||
''ECK4233, b4238, JW4197''<ref name='LIB:Riley_2006'/> | ''ECK4233, b4238, JW4197''<ref name='LIB:Riley_2006'/>, JW4197'' | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Desc. | ||
|| | || | ||
ribonucleoside-triphosphate reductase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | ribonucleoside-triphosphate reductase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | ||
| Line 43: | Line 43: | ||
Ribonucleoside triphosphate reductase, class III, anaerobic<ref name='LIB:EcoGene'/> | Ribonucleoside triphosphate reductase, class III, anaerobic<ref name='LIB:EcoGene'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
|| | || | ||
anaerobic ribonucleoside-triphosphate reductase<ref name='LIB:Riley_2006'/>, B4238<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NrdD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''anaerobic ribonucleoside-triphosphate reductase<ref name='LIB:Riley_2006'/>, B4238<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NrdD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4233, JW4197, b4238'' | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Function from GO | ||
|| | |||
<GO_nr /> | |||
|- | |||
!align=left {{table_heading_style}} |Knock-Out Phenotype | |||
|| | || | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Regulation/Expression | ||
|| | || | ||
transcription unit(s): [[:Category:Txn_unit:nrdDG|nrdDG]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:nrdDG|nrdDG]]<ref name='LIB:EcoCyc10.6'/> | ||
|- | |- | ||
!align=left | !align=left {{table_heading_style}} |Regulation/Activity | ||
|| | || | ||
|- | |||
!align=left {{table_heading_style}} |Quick Links | |||
|| | |||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=nrdD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11417]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001382&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=nrdD&loc=MG1655%3A4460683..4458545,W3110%3A4467340..4465202,REL606%3A4445937..4443799,DH10B%3A4562491..4560353,BW2952%3A4397280..4399418]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4397280&end=4399418&gene=nrdD&aa=mtphvmkrdgckvpfkserikeailraakaaevddadycatvaavvseqmqgrnqvdineiqtavenqlmsgpykqlarayieyrhdrdierekrgrlnqeirglveqtnasllnenankdskviptqrdllagivakhyarqhllprdvvqahergdihyhdldyspffpmfncmlidlkgmltqgfkmgnaeieppksistatavtaqiiaqvashiyggttinridevlapfvtasynkhrktaeewnipdaegyansrtikecydafqsleyevntlhtangqtpfvtfgfglgtswesrliqesilrnriaglgknrktavfpklvfairdglnhkkgdpnydikqlalecaskrmypdilnydqvvkvtgsfktpmgcrsflgvwenengeqihdgrnnlgvislnlprialeakgdeatfwkllderlvlarkalmtriarlegvkarvapilymegacgvrlnadddvseifkngrasislgyigihetinalfggehvydneqlrakgiaiverlrqavdqwkeetgygfslystpsenlcdrfcrldtaefgvvpgvtdkgyytnsfhldvekkvnpydkidfeapypplanggficygeypniqhnlkaledvwdysyqhvpyygtntpidecyecgftgefectskgftcpkcgnhdasrvsvtrrvcgylgspdarpfnagkqeevkrrvkhlgngqig]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=nrdD+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=nrdD]] | |||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Latest revision as of 21:47, 27 May 2013
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
nrdD |
|---|---|
| Gene Synonym(s) |
ECK4233, b4238, JW4197[1], JW4197 |
| Product Desc. |
ribonucleoside-triphosphate reductase[2][3]; Component of ribonucleoside-triphosphate reductase[2][3]; anaerobic nucleoside-triphosphate reductase activating system[2][3] Ribonucleoside triphosphate reductase, class III, anaerobic[4] |
| Product Synonyms(s) |
anaerobic ribonucleoside-triphosphate reductase[1], B4238[2][1], NrdD[2][1] , ECK4233, JW4197, b4238 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Activated NrdD is predicted to be cleaved by oxygen at the Gly681 radical, dropping the last 31 aa. Requires AdoMet for oxidation of the iron-sulfur center and glycine radical formation. FNR regulon. Binds TrxA (Kumar, 2004).[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.