rbn:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
imported>WikiEntryBot
Automated import of articles
touch
 
(18 intermediate revisions by 4 users not shown)
Line 1: Line 1:
<!--PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE, YOU'RE PROBABLY IN THE WRONG PLACE-->
<!--
***************************************************************************************************************************************************
*
*
*              PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,
*                            YOU'RE PROBABLY IN THE WRONG PLACE
*
*
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}   
<noinclude>{{TabsTop}}   
{{Tab On|Quickview|rbn}}{{Tab|Gene|rbn}}{{Tab|Gene Product(s)|rbn}}{{Tab|Expression|rbn}}{{Tab|Evolution|rbn}}{{Tab|On One Page|rbn}}{{TabsBottom}}
{{Tab On|Quickview|rbn}}{{Tab|Gene|rbn}}{{Tab|Gene Product(s)|rbn}}{{Tab|Expression|rbn}}{{Tab|Evolution|rbn}}{{Tab|On One Page|rbn}}{{TabsBottom}}
Line 8: Line 17:
|}
|}
</noinclude>
</noinclude>
<!--box uid=421aa90e079fa326b6494f812ad13e79..Y469f90979b4bc-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.6286.X49b021b4777e1-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
{|{{Prettytable}}
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|   id="X49b021b4777e1"  class=" tableEdit New_Quickview_Table" 
 
|-
|-
!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
|
||
[[rbn:Gene|''rbn]]'' (synonyms: ''elaC, ECK2262, b2268, JW2263, ecoZ, rnz, zipD'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''rbn''
|-
|-
!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
|
||
[[rbn:Gene_Product(s)|ElaC product]]<ref name='LIB:Riley_2006'/>: binuclear zinc phosphodiesterase product, ZipD product, Rnz product, B2268 product, EcoZ product
''elaC, ECK2262, b2268, JW2263, ecoZ, rnz, zipD''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>, zipD''
|-
|-
!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
|
||
ElaC<ref name='LIB:EcoCyc10.6'/> Rbn<ref name='LIB:EcoCyc11.1'/>  
ElaC<ref name='LIB:EcoCyc10.6'/>; Rbn<ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:RNase BN|RNase BN]]<ref name='LIB:EcoCyc11.1'/>
Component of [[:Category:Complex:RNase BN|RNase BN]]<ref name='LIB:EcoCyc11.1'/>


RNase BN, tRNA processing enzyme; has zinc phosphodiesterase activity<ref name='LIB:EcoGene'/>
|-
!align=left {{table_heading_style}} |Product Synonyms(s)
||
''binuclear zinc phosphodiesterase<ref name='LIB:Riley_2006'/>, ZipD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Rnz<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2268<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EcoZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ElaC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2262, ecoZ, elaC, JW2263, rnz, zipD, b2268''
|-
!align=left {{table_heading_style}} |Function from GO
||
<GO_nr />
|-
|-
!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
|
||


|-
|-
!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
|
||
transcription unit(s): [[:Category:Txn_unit:elaC|elaC]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:elaC|elaC]]<ref name='LIB:EcoCyc10.6'/>  
|-
|-
!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
|
||


|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..Y469f90979b4bc&page=&pagename={{FULLPAGENAMEE}} edit table]
!align=left {{table_heading_style}} |Quick Links
||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rbn&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7175]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003751&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rbn&loc=MG1655%3A2379630..2380547,W3110%3A2386278..2387195,DH10B%3A4173866..4174738,BW2952%3A2265435..2266352]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2265435&end=2266352&gene=rbn&aa=mkrdelmeliflgtsagvptrtrnvtaillnlqhptqsglwlfdcgegtqhqllhtafnpgkldkifishlhgdhlfglpgllcsrsmsgiiqpltiygpqgirefvetalrisgswtdypleiveigageilddglrkvtayplehplecygyrieehdkpgalnaqalkaagvppgplfqelkagktitledgrqingadylaapvpgkalaifgdtgpcdaaldlakgvdvmvheatlditmeakansrghsstrqaatlareagvgkliithvssryddkgcqhllrecrsifpatelandftvfnv]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rbn+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rbn]]&nbsp;&nbsp;
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.6286.X49b021b4777e1&page=6286&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..Y469f90979b4bc-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.6286.X49b021b4777e1--></protect>
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
==Notes==
===Notes===
{{BacktoTop}}
 
elaC is renamed rbn.  The elaABCD genes are named, without a phenotypic explanation, in Genbank U58768. yihY was previously thought to be rbn. rbn is an essential gene [not clear this is correct].  Schilling, et al. Biochem Biophys Res Commun. 2004 Aug 6;320(4):1365-73. has erratum in Biochem Biophys Res Commun. 2005 Feb 4;327(1):371.<ref name='LIB:EcoGene'/>




<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
<references/>
<references/>
</noinclude>
</noinclude>

Latest revision as of 21:54, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rbn

Gene Synonym(s)

elaC, ECK2262, b2268, JW2263, ecoZ, rnz, zipD[1][2], zipD

Product Desc.

ElaC[3]; Rbn[2];

Component of RNase BN[2]

RNase BN, tRNA processing enzyme; has zinc phosphodiesterase activity[4]

Product Synonyms(s)

binuclear zinc phosphodiesterase[1], ZipD[3][1], Rnz[3][1], B2268[3][1], EcoZ[3][1], ElaC[3][1] , ECK2262, ecoZ, elaC, JW2263, rnz, zipD, b2268

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): elaC[3]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


elaC is renamed rbn. The elaABCD genes are named, without a phenotypic explanation, in Genbank U58768. yihY was previously thought to be rbn. rbn is an essential gene [not clear this is correct]. Schilling, et al. Biochem Biophys Res Commun. 2004 Aug 6;320(4):1365-73. has erratum in Biochem Biophys Res Commun. 2005 Feb 4;327(1):371.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=rbn:Quickview&oldid=1398289"