fimC:Quickview: Difference between revisions

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{| id="R49aee5909b1c1"  class=" tableEdit New_Quickview_Table"   
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|-
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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''fimC''  
''fimC''
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK4307, b4316, JW4279, pil, pilB, pilC''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK4307, b4316, JW4279, pil, pilB, pilC''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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periplasmic chaperone, required for type 1 fimbriae<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
periplasmic chaperone, required for type 1 fimbriae<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
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Periplasmic chaperone for type 1 fimbriae; FimCD chaperone-usher transport<ref name='LIB:EcoGene'/>
Periplasmic chaperone for type 1 fimbriae; FimCD chaperone-usher transport<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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chaperone, periplasmic product<ref name='LIB:Riley_2006'/>, B4316 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PilC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PilB product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FimC product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''chaperone, periplasmic<ref name='LIB:Riley_2006'/>, B4316<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PilC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PilB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FimC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4307, JW4279, b4316''
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:fimAICDFGH|fimAICDFGH]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:fimAICDFGH|fimAICDFGH]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=fimC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10310]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000304&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=fimC&loc=MG1655%3A4542327..4543052,W3110%3A4548984..4549709,REL606%3A4525218..4525943,BW2952%3A4480812..4481537]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4480812&end=4481537&gene=fimC&aa=msnknvnvrksqeitfcllagilmfmammvagraeagvalgatrviypagqkqeqlavtnndenstyliqswvenadgvkdgrfivtpplfamkgkkentlrildatnnqlpqdreslfwmnvkaipsmdkskltentlqlaiisriklyyrpaklalppdqaaeklrfrrsansltlinptpyyltvtelnagtrvlenalvppmgestvklpsdagsnityrtindygaltpkmtgvme]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=fimC+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=fimC]]&nbsp;&nbsp;


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Latest revision as of 21:50, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

fimC

Gene Synonym(s)

ECK4307, b4316, JW4279, pil, pilB, pilC[1][2]

Product Desc.

periplasmic chaperone, required for type 1 fimbriae[2][3]

Periplasmic chaperone for type 1 fimbriae; FimCD chaperone-usher transport[4]

Product Synonyms(s)

chaperone, periplasmic[1], B4316[2][1], PilC[2][1], PilB[2][1], FimC[2][1] , ECK4307, JW4279, b4316

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): fimAICDFGH[2]

Regulation/Activity
Quick Links



        

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Notes

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FimC has Ig-like domains: pfam PF00345 aligns to N-terminal residues 37-157, and pfam PF02753 aligns to C-terminal residues 161-237. First 36 aa are a type I signal peptide.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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