nemR:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
imported>WikiEntryBot
Automated import of articles
touch
 
(19 intermediate revisions by 3 users not shown)
Line 1: Line 1:
<!--PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE, YOU'RE PROBABLY IN THE WRONG PLACE-->
<!--
***************************************************************************************************************************************************
*
*
*              PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,
*                            YOU'RE PROBABLY IN THE WRONG PLACE
*
*
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}   
<noinclude>{{TabsTop}}   
{{Tab On|Quickview|ydhM}}{{Tab|Gene|ydhM}}{{Tab|Gene Product(s)|ydhM}}{{Tab|Expression|ydhM}}{{Tab|Evolution|ydhM}}{{Tab|On One Page|ydhM}}{{TabsBottom}}
{{Tab On|Quickview|nemR}}{{Tab|Gene|nemR}}{{Tab|Gene Product(s)|nemR}}{{Tab|Expression|nemR}}{{Tab|Evolution|nemR}}{{Tab|On One Page|nemR}}{{TabsBottom}}
{|
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
Line 8: Line 17:
|}
|}
</noinclude>
</noinclude>
<!--box uid=421aa90e079fa326b6494f812ad13e79..V469f90590c0a5-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.5051.H4a79c51832fa3-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
{|{{Prettytable}}
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|   id="H4a79c51832fa3"  class=" tableEdit New_Quickview_Table" 
 
|-
|-
!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
|
||
[[ydhM:Gene|''ydhM]]'' (synonyms: ''ECK1645, b1649, JW5874'')<ref name='LIB:Riley_2006'/>
''nemR''
|-
|-
!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
|
||
[[ydhM:Gene_Product(s)|YdhM product]]<ref name='LIB:Riley_2006'/>: predicted DNA-binding transcriptional regulator product, B1649 product
''ECK1645, b1649, JW5874'', ydhM<ref name='LIB:Riley_2006'/>, JW5874, ydhM''
|-
|-
!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
|
||
hypothetical protein<ref name='LIB:EcoCyc10.6'/> predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>  
hypothetical protein<ref name='LIB:EcoCyc10.6'/>; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>. YdhM binding to the <em>ydhM-nemA</em> promoter is reduced by addition of NEM.  Genomic SELEX identifies a binding site for YdhM in the <em>ydhM-nemA</em> promoter region. <ref name='PMID:18567656'/>


|-
|-
!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
|
||
''predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B1649<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdhM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1645, JW5874, ydhM, b1649''
|-
!align=left {{table_heading_style}} |Function from GO
||
<GO_nr />
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
||


|-
|-
!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
|
||
transcription unit(s): 
 
|-
|-
!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
|
||


|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..V469f90590c0a5&page=&pagename={{FULLPAGENAMEE}} edit table]
!align=left {{table_heading_style}} |Quick Links
||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=nemR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6889]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003478&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=nemR&loc=MG1655%3A1724131..1724646,W3110%3A1727821..1728336,BW2952%3A1616106..1616705]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1616106&end=1616705&gene=nemR&aa=mnkhtehdtrehllatgeqlclqrgftgmglsellktaevpkgsfyhyfrskeafgvamlerhyaayhqrltellqsgegnyrdrilayyqqtlnqfcqhgtisgcltvklsaevcdlsedmrsamdkgargviallsqalengrenhcltfcgeplqqaqvlyalwlganlqakisrsfeplenalahvkniiatpav]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=nemR+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=nemR]]&nbsp;&nbsp;
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.5051.H4a79c51832fa3&page=5051&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..V469f90590c0a5-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.5051.H4a79c51832fa3--></protect>
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
==Notes==
===Notes===
{{BacktoTop}}




<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
<references/>
<references/>
</noinclude>
</noinclude>

Latest revision as of 21:56, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

nemR

Gene Synonym(s)

ECK1645, b1649, JW5874, ydhM[1], JW5874, ydhM

Product Desc.

hypothetical protein[2]; predicted DNA-binding transcriptional regulator[3]. YdhM binding to the ydhM-nemA promoter is reduced by addition of NEM. Genomic SELEX identifies a binding site for YdhM in the ydhM-nemA promoter region. [4]

Product Synonyms(s)

predicted DNA-binding transcriptional regulator[1], B1649[2][1], YdhM[2][1] , ECK1645, JW5874, ydhM, b1649

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Umezawa, Y et al. (2008) The uncharacterized transcription factor YdhM is the regulator of the nemA gene, encoding N-ethylmaleimide reductase. J. Bacteriol. 190 5890-7 PubMed
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=nemR:Quickview&oldid=1398789"