degS:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''degS''  
''degS''
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3224, b3235, JW3204, hhoB, htrH''<ref name='LIB:Riley_2006'/>
''ECK3224, b3235, JW3204, hhoB, htrH''<ref name='LIB:Riley_2006'/>, htrH''
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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inner membrane serine protease required for the extracytoplasmic stress response mediated by sigmaE<ref name='LIB:EcoCyc10.6'/>; serine endoprotease, periplasmic<ref name='LIB:EcoCyc11.1'/>
inner membrane serine protease required for the extracytoplasmic stress response mediated by sigmaE<ref name='LIB:EcoCyc10.6'/>; serine endoprotease, periplasmic<ref name='LIB:EcoCyc11.1'/>
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Serine protease, degrades periplasmic RseA, activating RpoE; multicopy suppressor of prc; periplasmic stress sensor for unfolded or misfolded OMPs<ref name='LIB:EcoGene'/>
Serine protease, degrades periplasmic RseA, activating RpoE; multicopy suppressor of prc; periplasmic stress sensor for unfolded or misfolded OMPs<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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serine endoprotease, periplasmic<ref name='LIB:Riley_2006'/>, B3235<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HtrH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HhoB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DegS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''serine endoprotease, periplasmic<ref name='LIB:Riley_2006'/>, B3235<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HtrH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HhoB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DegS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3224, hhoB, htrH, JW3204, b3235''
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:degQ|degQ]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:degQ|degQ]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=degS&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11652]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001596&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=degS&loc=MG1655%3A3380222..3381289,W3110%3A3382055..3383122,REL606%3A3310098..3311165,DH10B%3A3477967..3479034,BW2952%3A3267370..3268437]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3267370&end=3268437&gene=degS&aa=mfvkllrsvaiglivgaillvampslrslnplstpqfdstdetpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvindadqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignpynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfdksndgetpegigfaipfqlatkimdklirdgrvirgyigiggreiaplhaqgggidqlqgivvnevspdgpaanagiqvndliisvdnkpaisaletmdqvaeirpgsvipvvvmrddkqltlqvtiqeypatn]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=degS+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=degS]]&nbsp;&nbsp;


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Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

degS

Gene Synonym(s)

ECK3224, b3235, JW3204, hhoB, htrH[1], htrH

Product Desc.

inner membrane serine protease required for the extracytoplasmic stress response mediated by sigmaE[2]; serine endoprotease, periplasmic[3]

Serine protease, degrades periplasmic RseA, activating RpoE; multicopy suppressor of prc; periplasmic stress sensor for unfolded or misfolded OMPs[4]

Product Synonyms(s)

serine endoprotease, periplasmic[1], B3235[2][1], HtrH[2][1], HhoB[2][1], DegS[2][1] , ECK3224, hhoB, htrH, JW3204, b3235

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): degQ[2]

Regulation/Activity
Quick Links



        

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Notes

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degS is an essential gene. DegS may be anchored to the inner membrane. Mutants have elevated OM vesiculation (McBroom, 2006).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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