gfcE:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
imported>WikiEntryBot
Automated import of articles
touch
 
(17 intermediate revisions by 3 users not shown)
Line 1: Line 1:
<!--PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE, YOU'RE PROBABLY IN THE WRONG PLACE-->
<!--
***************************************************************************************************************************************************
*
*
*              PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,
*                            YOU'RE PROBABLY IN THE WRONG PLACE
*
*
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}   
<noinclude>{{TabsTop}}   
{{Tab On|Quickview|gfcE}}{{Tab|Gene|gfcE}}{{Tab|Gene Product(s)|gfcE}}{{Tab|Expression|gfcE}}{{Tab|Evolution|gfcE}}{{Tab|On One Page|gfcE}}{{TabsBottom}}
{{Tab On|Quickview|gfcE}}{{Tab|Gene|gfcE}}{{Tab|Gene Product(s)|gfcE}}{{Tab|Expression|gfcE}}{{Tab|Evolution|gfcE}}{{Tab|On One Page|gfcE}}{{TabsBottom}}
Line 8: Line 17:
|}
|}
</noinclude>
</noinclude>
<!--box uid=421aa90e079fa326b6494f812ad13e79..L469f9016b77ee-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.3711.I49aee71ec78ba-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
{|{{Prettytable}}
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|   id="I49aee71ec78ba"  class=" tableEdit New_Quickview_Table" 
 
|-
|-
!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
|
||
[[gfcE:Gene|''gfcE]]'' (synonyms: ''yccZ, ECK0974, b0983, JW0966'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>
''gfcE''
|-
|-
!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
|
||
[[gfcE:Gene_Product(s)|YccZ product]]<ref name='LIB:Riley_2006'/>: predicted exopolysaccharide export protein product, B0983 product, GfcE product
''yccZ, ECK0974, b0983, JW0966''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>, JW0966''
|-
|-
!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
|
||
predicted exopolysaccharide export protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
predicted exopolysaccharide export protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Lipoprotein required for formation of the O-antigen capsule; silenced by IS1D insertion in promoter region<ref name='LIB:EcoGene'/>
|-
!align=left {{table_heading_style}} |Product Synonyms(s)
||
''predicted exopolysaccharide export protein<ref name='LIB:Riley_2006'/>, B0983<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YccZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GfcE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0974, JW0966, yccZ, b0983''
|-
!align=left {{table_heading_style}} |Function from GO
||
<GO_nr />
|-
|-
!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
|
||


|-
|-
!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
|
||
transcription unit(s): [[:Category:Txn_unit:yccC|yccC]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yccC|yccC]]<ref name='LIB:EcoCyc10.6'/>  
|-
|-
!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
|
||


|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..L469f9016b77ee&page=&pagename={{FULLPAGENAMEE}} edit table]
!align=left {{table_heading_style}} |Quick Links
||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=gfcE&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6504]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003104&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=gfcE&loc=MG1655%3A1045026..1043887,W3110%3A1046225..1045086,DH10B%3A1098954..1097815,REL606%3A1061755..1062894,BW2952%3A946855..947994]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=946855&end=947994&gene=gfcE&aa=mkknifkfsvltlavlsltactlvpgqnlstsnkdvielpdnqydldkmvniypvtpglidqlrakpimsqanpeleqqianyeyrigigdvlmvtvwdhpelttpagqyrsasdtgnwvnadgaifypyigrlkvagktltqvrneitarldsviespqvdvsvaafrsqkayvtgevsksgqqpitnipltimdainaaggltadadwrnvvltqngvktkvnlyalmqrgdlrqnkllhpgdilfiprnddlkvfvmgevgkqstlkmdrsgmtlaealgnaegmnqdvadatgifviratqnkqngkianiyqlnakdasamilgtefqlepydivyvttaplarwnrvisllvptisgvhdltetsrwiqtwpn]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=gfcE+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=gfcE]]&nbsp;&nbsp;
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.3711.I49aee71ec78ba&page=3711&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..L469f9016b77ee-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.3711.I49aee71ec78ba--></protect>
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
==Notes==
===Notes===
{{BacktoTop}}
 
GfcE may form a channel through the outer membrane for transport of the O-antigen capsule polysaccharides. yccZ and wza are paralogs. Part of the gfcABCDE-etp-etk operon. First 20 aa are a type II signal peptide. Very weak RBS sequence.<ref name='LIB:EcoGene'/>
 




<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
<references/>
<references/>
</noinclude>
</noinclude>

Latest revision as of 21:50, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

gfcE

Gene Synonym(s)

yccZ, ECK0974, b0983, JW0966[1][2][3], JW0966

Product Desc.

predicted exopolysaccharide export protein[3][2]

Lipoprotein required for formation of the O-antigen capsule; silenced by IS1D insertion in promoter region[4]

Product Synonyms(s)

predicted exopolysaccharide export protein[1], B0983[3][1], YccZ[3][1], GfcE[3][1] , ECK0974, JW0966, yccZ, b0983

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yccC[3]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


GfcE may form a channel through the outer membrane for transport of the O-antigen capsule polysaccharides. yccZ and wza are paralogs. Part of the gfcABCDE-etp-etk operon. First 20 aa are a type II signal peptide. Very weak RBS sequence.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=gfcE:Quickview&oldid=1397016"