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{{Tab On|Quickview|yfaU}}{{Tab|Gene|yfaU}}{{Tab|Gene Product(s)|yfaU}}{{Tab|Expression|yfaU}}{{Tab|Evolution|yfaU}}{{Tab|On One Page|yfaU}}{{TabsBottom}}
{{Tab On|Quickview|rhmA}}{{Tab|Gene|rhmA}}{{Tab|Gene Product(s)|rhmA}}{{Tab|Expression|rhmA}}{{Tab|Evolution|rhmA}}{{Tab|On One Page|rhmA}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[yfaU:Gene|''yfaU]]'' (synonyms: ''ECK2238, b2245, JW2239'')<ref name='LIB:Riley_2006'/>
''rhmA''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[yfaU:Gene_Product(s)|YfaU product]]<ref name='LIB:Riley_2006'/>: predicted 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase<ref name='LIB:Riley_2006'/>, B2245<ref name='LIB:EcoCyc10.6'/>, YfaU<ref name='LIB:EcoCyc10.6'/>
''ECK2238, b2245, JW2239'', yfaU<ref name='LIB:Riley_2006'/>, JW2239, yfaU''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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predicted aldolase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted aldolase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>.  Crystal structure shows that RhmA is a
 
metal-dependent class II aldolase belonging
to the pyruvate/enolpyruvate binding (�/R)8 barrel superfamily.<ref name='PMID:18754683 '/>, Genomic context suggested a 2-dehydro-3-deoxy
sugar aldolase function rather than the 4-hydroxy-2-ketoheptane-
1,7-dioate aldolase function as annotated in the
databases based on homology with the related HpcH.
Functional assignment of YfaW as a L-rhamnonate dehydratase
suggested 2-dehydro-3-deoxy-L-rhamnonate is the
physiological substrate of RhmA, and enzyme kinetic measurements
support this assignment.


Putative HHED aldolase, function unknown<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase<ref name='LIB:Riley_2006'/>, B2245<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RhmA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2238, JW2239, yfaU, b2245''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:yfaU|yfaU]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rhmA|rhmA]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yfaU&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7158]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003734&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yfaU&loc=MG1655%3A2356867..2356064,W3110%3A2363515..2362712,DH10B%3A2447855..2447052,REL606%3A2305358..2304555,BW2952%3A2241869..2242672]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2241869&end=2242672&gene=yfaU&aa=mnallsnpfkerlrkgevqiglwlssttaymaeiaatsgydwllidgehapntiqdlyhqlqavapyasqpvirpvegskplikqvldigaqtllipmvdtaeqarqvvsatryppygergvgasvaraarwgrienymaqvndslcllvqvesktaldnldeildvegidgvfigpadlsaslgypdnaghpevqriietsirriraagkaagflavapdmaqqclawganfvavgvdtmlysdaldqrlamfksgkngprikgsy]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yfaU+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yfaU]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
YfaU is crystallized.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:42, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rhmA

Gene Synonym(s)

ECK2238, b2245, JW2239, yfaU[1], JW2239, yfaU

Product Desc.

predicted aldolase[2][3]. Crystal structure shows that RhmA is a metal-dependent class II aldolase belonging to the pyruvate/enolpyruvate binding (�/R)8 barrel superfamily.[4], Genomic context suggested a 2-dehydro-3-deoxy sugar aldolase function rather than the 4-hydroxy-2-ketoheptane- 1,7-dioate aldolase function as annotated in the databases based on homology with the related HpcH. Functional assignment of YfaW as a L-rhamnonate dehydratase suggested 2-dehydro-3-deoxy-L-rhamnonate is the physiological substrate of RhmA, and enzyme kinetic measurements support this assignment.

Putative HHED aldolase, function unknown[5]

Product Synonyms(s)

predicted 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase[1], B2245[2][1], RhmA[2][1] , ECK2238, JW2239, yfaU, b2245

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rhmA[2]

Regulation/Activity
Quick Links



        

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Notes

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YfaU is crystallized.[5]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Rea, D et al. (2008) Crystal structure and functional assignment of YfaU, a metal ion dependent class II aldolase from Escherichia coli K12. Biochemistry 47 9955-65 PubMed
  5. ↑ 5.0 5.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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