dmlA:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
imported>WikiEntryBot
Automated import of articles
touch
 
(20 intermediate revisions by 3 users not shown)
Line 1: Line 1:
<!--PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE, YOU'RE PROBABLY IN THE WRONG PLACE-->
<!--
***************************************************************************************************************************************************
*
*
*              PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,
*                            YOU'RE PROBABLY IN THE WRONG PLACE
*
*
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}   
<noinclude>{{TabsTop}}   
{{Tab On|Quickview|yeaU}}{{Tab|Gene|yeaU}}{{Tab|Gene Product(s)|yeaU}}{{Tab|Expression|yeaU}}{{Tab|Evolution|yeaU}}{{Tab|On One Page|yeaU}}{{TabsBottom}}
{{Tab On|Quickview|dmlA}}{{Tab|Gene|dmlA}}{{Tab|Gene Product(s)|dmlA}}{{Tab|Expression|dmlA}}{{Tab|Evolution|dmlA}}{{Tab|On One Page|dmlA}}{{TabsBottom}}
{|
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
Line 8: Line 17:
|}
|}
</noinclude>
</noinclude>
<!--box uid=421aa90e079fa326b6494f812ad13e79..S469f90682dcd2-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.5357.T49b02db64c9bf-->
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--
{|{{Prettytable}}
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|   id="T49b02db64c9bf"  class=" tableEdit New_Quickview_Table" 
 
|-
|-
!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
|
||
[[yeaU:Gene|''yeaU]]'' (synonyms: ''ECK1798, b1800, JW1789, ttuC'')<ref name='LIB:Riley_2006'/>
''dmlA''
|-
|-
!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
|
||
[[yeaU:Gene_Product(s)|YeaU product]]<ref name='LIB:Riley_2006'/>: predicted dehydrogenase<ref name='LIB:Riley_2006'/>, B1800<ref name='LIB:EcoCyc10.6'/>, YeaU<ref name='LIB:EcoCyc10.6'/>, TtuC<ref name='LIB:EcoCyc10.6'/>
''yeaU, ECK1798, b1800, JW1789, ttuC''<ref name='LIB:Riley_2006'/>
|-
|-
!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
|
||
predicted dehydrogenase<ref name='LIB:EcoCyc10.6'/>D-malate dehydrogenase (decarboxylating)<ref name='LIB:EcoCyc11.1'/>
predicted dehydrogenase<ref name='LIB:EcoCyc10.6'/>; D-malate dehydrogenase (decarboxylating)<ref name='LIB:EcoCyc11.1'/>
 


D-malate oxidase, NAD-dependent; probable tartrate dehydrogenase<ref name='LIB:EcoGene'/>
|-
!align=left {{table_heading_style}} |Product Synonyms(s)
||
''predicted dehydrogenase<ref name='LIB:Riley_2006'/>, B1800<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YeaU<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TtuC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1798, JW1789, yeaU, b1800''
|-
!align=left {{table_heading_style}} |Function from GO
||
<GO_nr />
|-
|-
!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
|
||


|-
|-
!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
|
||
transcription unit(s): [[:Category:txn_units:yeaU|yeaU]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yeaU|yeaU]]<ref name='LIB:EcoCyc10.6'/>  
|-
|-
!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
|
||


|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..S469f90682dcd2&page=&pagename={{FULLPAGENAMEE}} edit table]
!align=left {{table_heading_style}} |Quick Links
||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=dmlA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6986]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003573&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=dmlA&loc=MG1655%3A1879936..1881021,W3110%3A1883626..1884711,DH10B%3A1970507..1971592,REL606%3A1860490..1861575,BW2952%3A1771995..1773080]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1771995&end=1773080&gene=dmlA&aa=mmktmriaaipgdgigkevlpegirvlqaaaerwgfalsfeqmewasceyyshhgkmmpddwheqlsrfdaiyfgavgwpdtvpdhislwgsllkfrrefdqyvnlrpvrlfpgvpcplagkqpgdidfyvvrentegeysslggrvnegtehevviqesvftrrgvdrilryafelaqsrprktltsatksnglaismpywderveamaenypeirwdkqhidilcarfvmqperfdvvvasnlfgdilsdlgpactgtigiapsanlnpertfpslfepvhgsapdiygknianpiatiwagammldflgngderfqqahngilaaieeviahgpktpdmkgnattpqvadaickiilr]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dmlA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=dmlA]]&nbsp;&nbsp;
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.5357.T49b02db64c9bf&page=5357&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..S469f90682dcd2-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.5357.T49b02db64c9bf--></protect>
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
==Notes==
===Notes===
{{BacktoTop}}
 
AFMB Structural Genomics target No. 39 (http://afmb.cnrs-mrs.fr/article171.html). YeaU is 77% identical to a characterized tartrate dehydrogenase from Pseudomonas putida (SP:Q51945); this P. putida enzyme also has D-malate oxidase activity (Karsten, 2002). The D-malate oxidase activity of YeaU has been confirmed (Reed, 2006), but the probable tartrate dehydrogenase activity has not been tested. Mutations in yeaT or dmlA block growth on D-malate (Reed, 2006). After four hours of Zn(II) stress, protein levels increased (Easton, 2006).<ref name='LIB:EcoGene'/>
 




<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
<references/>
<references/>
</noinclude>
</noinclude>

Latest revision as of 21:42, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

dmlA

Gene Synonym(s)

yeaU, ECK1798, b1800, JW1789, ttuC[1]

Product Desc.

predicted dehydrogenase[2]; D-malate dehydrogenase (decarboxylating)[3]

D-malate oxidase, NAD-dependent; probable tartrate dehydrogenase[4]

Product Synonyms(s)

predicted dehydrogenase[1], B1800[2][1], YeaU[2][1], TtuC[2][1] , ECK1798, JW1789, yeaU, b1800

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yeaU[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


AFMB Structural Genomics target No. 39 (http://afmb.cnrs-mrs.fr/article171.html). YeaU is 77% identical to a characterized tartrate dehydrogenase from Pseudomonas putida (SP:Q51945); this P. putida enzyme also has D-malate oxidase activity (Karsten, 2002). The D-malate oxidase activity of YeaU has been confirmed (Reed, 2006), but the probable tartrate dehydrogenase activity has not been tested. Mutations in yeaT or dmlA block growth on D-malate (Reed, 2006). After four hours of Zn(II) stress, protein levels increased (Easton, 2006).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=dmlA:Quickview&oldid=1394965"