yahD:Evolution: Difference between revisions

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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00023 PFAM:PF00023]
[http://pfam.janelia.org/family/PF00023 PF00023 Ankyrin repeat]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00023 PF00023  Ankyrin repeat]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=48403 SUPERFAMILY:48403]
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[[EcoCyc]]
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EcoCyc:G6183
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13588
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002802
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3358
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0001095
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:30, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000009166 (score: 1.000; bootstrap: 73%)
  • ENSANGP00000001960 (score: 1.000; bootstrap: 72%)
  • ENSANGP00000010409 (score: 0.148)
  • ENSANGP00000006233 (score: 0.144)
  • ENSANGP00000026224 (score: 0.130)
  • ENSANGP00000012854 (score: 0.123)
  • ENSANGP00000013300 (score: 0.121)
  • ENSANGP00000013346 (score: 0.061)
  • ENSANGP00000005014 (score: 0.059)
  • ENSANGP00000018360 (score: 0.055)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000013137 (score: 1.000; bootstrap: 56%)
  • ENSAPMP00000008833 (score: 0.094)
  • ENSAPMP00000033051 (score: 0.077)
  • ENSAPMP00000015383 (score: 0.062)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G25600 (score: 1.000; bootstrap: 65%)
  • AT4G32500 (score: 0.745)
  • AT2G26650 (score: 0.543)
  • AT4G18290 (score: 0.321)
  • AT5G46240 (score: 0.320)
  • AT4G22200 (score: 0.292)
  • AT4G32650 (score: 0.234)
  • AT5G37500 (score: 0.174)
  • AT3G02850 (score: 0.171)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000001482 (score: 1.000; bootstrap: 72%)
  • ENSBTAP00000004242 (score: 0.097)
  • ENSBTAP00000006467 (score: 0.086)
  • ENSBTAP00000034443 (score: 0.083)
  • ENSBTAP00000025373 (score: 0.083)
  • ENSBTAP00000005565 (score: 0.081)
  • ENSBTAP00000005473 (score: 0.077)
  • ENSBTAP00000015626 (score: 0.065)
  • ENSBTAP00000001917 (score: 0.052)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00031034 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00006780 (score: 1.000; bootstrap: 61%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000005898 (score: 1.000; bootstrap: 66%)
  • ENSCAFP00000017398 (score: 0.095)
  • ENSCAFP00000019231 (score: 0.091)
  • ENSCAFP00000004479 (score: 0.079)
  • ENSCAFP00000008873 (score: 0.077)
  • ENSCAFP00000015899 (score: 0.067)
  • ENSCAFP00000000164 (score: 0.058)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000009131 (score: 1.000; bootstrap: 71%)
  • ENSCINP00000013472 (score: 1.000; bootstrap: 71%)
  • ENSCINP00000009425 (score: 0.104)
  • ENSCINP00000013478 (score: 0.090)
  • ENSCINP00000002697 (score: 0.066)
  • ENSCINP00000006104 (score: 0.063)
  • ENSCINP00000010301 (score: 0.060)
  • ENSCINP00000007941 (score: 0.057)
  • ENSCINP00000015849 (score: 0.056)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050522-247 (score: 1.000; bootstrap: 64%)
  • ZDB-CDNA-050522-247 (score: 1.000; bootstrap: 66%)
  • ZDB-GENE-030728-7 (score: 0.114)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0191441 (score: 1.000; bootstrap: 56%)
  • DDB0218221 (score: 0.136)
  • DDB0185105 (score: 0.109)
  • DDB0218577 (score: 0.066)
  • DDB0229880 (score: 0.062)
  • DDB0204481 (score: 0.056)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0031473 (score: 1.000; bootstrap: 67%)
  • FBgn0050387 (score: 1.000; bootstrap: 73%)
  • FBgn0017645 (score: 0.126)
  • FBgn0043884 (score: 0.121)
  • FBgn0011747 (score: 0.107)
  • FBgn0039590 (score: 0.105)
  • FBgn0027508 (score: 0.089)
  • FBgn0016920 (score: 0.067)
  • FBgn0039249 (score: 0.053)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA15807-PA (score: 1.000; bootstrap: 54%)
  • GA15806-PA (score: 0.051)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000019282 (score: 1.000; bootstrap: 63%)
  • ENSGALP00000020498 (score: 0.097)
  • ENSGALP00000000649 (score: 0.093)
  • ENSGALP00000012967 (score: 0.088)
  • ENSGALP00000019635 (score: 0.083)
  • ENSGALP00000018290 (score: 0.078)
  • ENSGALP00000023054 (score: 0.069)
  • ENSGALP00000005676 (score: 0.056)
  • ENSGALP00000018629 (score: 0.051)
  • ENSGALP00000032350 (score: 0.050)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000258306 (score: 1.000; bootstrap: 65%)
  • ENSP00000281131 (score: 1.000; bootstrap: 63%)
  • ENSP00000324863 (score: 0.089)
  • ENSP00000263635 (score: 0.083)
  • ENSP00000331516 (score: 0.079)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000008921 (score: 1.000; bootstrap: 61%)
  • ENSMMUP00000008127 (score: 0.082)
  • ENSMMUP00000029518 (score: 0.079)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000023562 (score: 1.000; bootstrap: 63%)
  • ENSMODP00000012651 (score: 0.092)
  • ENSMODP00000015327 (score: 0.082)
  • ENSMODP00000018217 (score: 0.073)

From Inparanoid:20070104

Mus musculus

  • MGI:2145661 (score: 1.000; bootstrap: 56%)
  • MGI:2444029 (score: 0.576)
  • MGI:88026 (score: 0.120)
  • MGI:88024 (score: 0.119)
  • MGI:1932101 (score: 0.101)
  • MGI:1921733 (score: 0.099)
  • MGI:1341087 (score: 0.083)
  • MGI:1335082 (score: 0.058)
  • MGI:1921743 (score: 0.057)
  • MGI:3045301 (score: 0.051)

From Inparanoid:20070104

Oryza gramene

  • Q571X8 (score: 1.000; bootstrap: 59%)
  • O04242 (score: 0.913)
  • Q9M671 (score: 0.776)
  • Q8VYX2 (score: 0.759)
  • Q8H569 (score: 0.609)
  • Q84ZX3 (score: 0.472)
  • Q6SA20 (score: 0.325)
  • Q8VX27 (score: 0.324)
  • Q75HP9 (score: 0.323)
  • Q70NS1 (score: 0.319)
  • Q5D1L6 (score: 0.318)
  • Q6K3T2 (score: 0.318)
  • Q9SM12 (score: 0.302)
  • Q5JM04 (score: 0.297)
  • Q5QNI1 (score: 0.289)
  • Q652U9 (score: 0.249)
  • Q7XUW4 (score: 0.184)
  • Q653P0 (score: 0.179)
  • Q5EEQ2 (score: 0.178)
  • Q5TKJ4 (score: 0.153)
  • Q7XT08 (score: 0.085)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000028204 (score: 1.000; bootstrap: 56%)
  • ENSPTRP00000034584 (score: 0.083)
  • ENSPTRP00000047175 (score: 0.079)
  • ENSPTRP00000021472 (score: 0.072)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000013983 (score: 1.000; bootstrap: 70%)
  • ENSRNOP00000032591 (score: 0.141)
  • ENSRNOP00000039357 (score: 0.112)
  • ENSRNOP00000041328 (score: 0.108)
  • ENSRNOP00000015386 (score: 0.108)
  • ENSRNOP00000036080 (score: 0.107)
  • ENSRNOP00000026680 (score: 0.088)
  • ENSRNOP00000045243 (score: 0.074)
  • ENSRNOP00000015432 (score: 0.060)
  • ENSRNOP00000033136 (score: 0.059)
  • ENSRNOP00000015813 (score: 0.051)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000182968 (score: 1.000; bootstrap: 53%)
  • NEWSINFRUP00000168946 (score: 0.810)
  • NEWSINFRUP00000147549 (score: 0.622)
  • NEWSINFRUP00000174369 (score: 0.584)
  • NEWSINFRUP00000150768 (score: 0.571)
  • NEWSINFRUP00000141539 (score: 0.456)
  • NEWSINFRUP00000137227 (score: 0.086)
  • NEWSINFRUP00000144219 (score: 0.074)
  • NEWSINFRUP00000144176 (score: 0.074)
  • NEWSINFRUP00000154402 (score: 0.071)
  • NEWSINFRUP00000171714 (score: 0.069)
  • NEWSINFRUP00000143424 (score: 0.066)
  • NEWSINFRUP00000138445 (score: 0.062)
  • NEWSINFRUP00000162376 (score: 0.056)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00032984001 (score: 1.000; bootstrap: 54%)
  • GSTENP00034134001 (score: 0.515)
  • GSTENP00000249001 (score: 0.352)
  • GSTENP00013612001 (score: 0.291)
  • GSTENP00023543001 (score: 0.240)
  • GSTENP00038141001 (score: 0.106)
  • GSTENP00029466001 (score: 0.082)
  • GSTENP00009544001 (score: 0.076)
  • GSTENP00031585001 (score: 0.071)
  • GSTENP00033044001 (score: 0.068)
  • GSTENP00026938001 (score: 0.066)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000049710 (score: 1.000; bootstrap: 61%)
  • ENSXETP00000023061 (score: 0.267)
  • ENSXETP00000011687 (score: 0.077)
  • ENSXETP00000019702 (score: 0.074)
  • ENSXETP00000016526 (score: 0.071)
  • ENSXETP00000024283 (score: 0.066)
  • ENSXETP00000020973 (score: 0.055)
  • ENSXETP00000049849 (score: 0.052)

From Inparanoid:20070104

E. coli O157

YAHD

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00023 Ankyrin repeat

Pfam (EcoliWiki Page)

PF00023 Ankyrin repeat

Superfamily (EcoliWiki Page)

SUPERFAMILY:48403

EcoCyc

EcoCyc:G6183

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13588

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002802

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3358

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001095

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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