valS:Evolution: Difference between revisions

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From ECOO157CYC  
From ECOO157CYC  


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00133 PFAM:PF00133]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=46589 SUPERFAMILY:46589]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=47323 SUPERFAMILY:47323]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50677 SUPERFAMILY:50677]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52374 SUPERFAMILY:52374]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11946:SF5 PTHR11946:SF5]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00133 PF00133  tRNA synthetases class I (I, L, M and V)]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF08264 PF08264  Anticodon-binding domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF10458 PF10458  Valyl tRNA synthetase tRNA binding arm]
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[[EcoCyc]]
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EcoCyc:EG11067
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11067
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001056
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1060
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0013946
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:38, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000010240 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000011461 (score: 0.051)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000014953 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G14610 (score: 1.000; bootstrap: 49%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000007404 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000014160 (score: 0.163)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00029903 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00006936 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000000899 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000000685 (score: 0.169)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000018459 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-010601-1 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231269 (score: 1.000; bootstrap: 100%)
  • DDB0231274 (score: 0.071)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0027079 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17927-PA (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000211402 (score: 1.000; bootstrap: 100%)
  • ENSP00000316092 (score: 0.167)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000008979 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000024488 (score: 0.162)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000018995 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000019773 (score: 0.146)

From Inparanoid:20070104

Mus musculus

  • MGI:90675 (score: 1.000; bootstrap: 100%)
  • MGI:1916165 (score: 0.165)

From Inparanoid:20070104

Oryza gramene

  • Q7G2B1 (score: 1.000; bootstrap: 62%)
  • Q851K9 (score: 0.691)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000030700 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000030618 (score: 0.052)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000001160 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000046565 (score: 0.164)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YGR094W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC17092c (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000151814 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000141774 (score: 0.184)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00015295001 (score: 1.000; bootstrap: 100%)
  • GSTENP00010900001 (score: 0.069)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000051937 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000006600 (score: 0.095)

From Inparanoid:20070104

Shigella flexneri

VALS

From SHIGELLACYC

E. coli O157

VALS

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:46589

Superfamily (EcoliWiki Page)

SUPERFAMILY:47323

Superfamily (EcoliWiki Page)

SUPERFAMILY:50677

Superfamily (EcoliWiki Page)

SUPERFAMILY:52374

Panther (EcoliWiki Page)

PTHR11946:SF5

Pfam (EcoliWiki Page)

PF00133 tRNA synthetases class I (I, L, M and V)

Pfam (EcoliWiki Page)

PF08264 Anticodon-binding domain

Pfam (EcoliWiki Page)

PF10458 Valyl tRNA synthetase tRNA binding arm

EcoCyc

EcoCyc:EG11067

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11067

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001056

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1060

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013946

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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