pgaC:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
Fixing references section.
touch
 
(6 intermediate revisions by the same user not shown)
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46abb51ba782f"  class=" tableEdit Evolution_homologs_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
Line 83: Line 83:
From ECOO157CYC  
From ECOO157CYC  


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.46011.W46abb51ba782f&page=46011&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.46011.W46abb51ba782f&page=46011&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.46011.W46abb51ba782f-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.46011.W46abb51ba782f-->
Line 108: Line 108:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46abb51dc4c64"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00535 PFAM:PF00535]
[http://pfam.janelia.org/family/PF00535 PF00535 Glycosyl transferase family 2]
|
|
   
   
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53448 SUPERFAMILY:53448]
|
|-
|
[[EcoCyc]]
|
EcoCyc:G6529
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG13863
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120003127
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB3623
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0003464
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.46011.L46abb51dc4c64&page=46011&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.46011.L46abb51dc4c64&page=46011&pagename={{FULLPAGENAMEE}}&type=0&template=Gene_accessions_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.46011.L46abb51dc4c64-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.46011.L46abb51dc4c64-->
Line 137: Line 179:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|class = 'sortable' border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46a80180a01d4"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.46011.L46a80180a01d4&page=46011&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table] || ||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.46011.L46a80180a01d4&page=46011&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.46011.L46a80180a01d4-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.46011.L46a80180a01d4-->

Latest revision as of 08:31, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Oryza gramene

  • Q7XIF5 (score: 1.000; bootstrap: 100%)
  • Q8W1N6 (score: 0.813)
  • Q8S7F4 (score: 0.694)
  • Q7PC73 (score: 0.694)
  • Q8S7W0 (score: 0.509)
  • Q7PC67 (score: 0.492)
  • Q7PC74 (score: 0.483)
  • Q948I4 (score: 0.467)
  • Q7XEU7 (score: 0.467)
  • Q7PC75 (score: 0.463)
  • Q67X45 (score: 0.463)
  • Q944E5 (score: 0.457)
  • Q67VS7 (score: 0.457)
  • Q7PC76 (score: 0.452)
  • Q6YWK8 (score: 0.434)
  • Q944E6 (score: 0.400)
  • Q6Z2T9 (score: 0.396)
  • Q8LIY0 (score: 0.301)
  • Q84Z01 (score: 0.294)
  • Q6L538 (score: 0.294)
  • Q8W1N8 (score: 0.292)
  • Q8W5S2 (score: 0.291)
  • Q6AU53 (score: 0.291)
  • Q69L19 (score: 0.291)
  • Q7PC70 (score: 0.290)
  • Q8W1M9 (score: 0.287)
  • Q650Z7 (score: 0.274)
  • Q7PC69 (score: 0.268)
  • Q8W1N9 (score: 0.216)
  • Q8W1N7 (score: 0.060)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000043421 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

E. coli O157

YCDQ

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00535 Glycosyl transferase family 2

Superfamily (EcoliWiki Page)

SUPERFAMILY:53448

EcoCyc

EcoCyc:G6529

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13863

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003127

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3623

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003464

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=pgaC:Evolution&oldid=1389608"