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{{Tab On|Quickview|ydhR}}{{Tab|Gene|ydhR}}{{Tab|Gene Product(s)|ydhR}}{{Tab|Expression|ydhR}}{{Tab|Evolution|ydhR}}{{Tab|On One Page|ydhR}}{{TabsBottom}}
{{Tab On|Quickview|ydhR}}{{Tab|Gene|ydhR}}{{Tab|Gene Product(s)|ydhR}}{{Tab|Expression|ydhR}}{{Tab|Evolution|ydhR}}{{Tab|On One Page|ydhR}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ydhR:Gene|''ydhR]]'' (synonyms: ''ECK1663, b1667, JW1657'')<ref name='LIB:Riley_2006'/>
''ydhR''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ydhR:Gene_Product(s)|YdhR product]]<ref name='LIB:Riley_2006'/>: predicted protein<ref name='LIB:Riley_2006'/>, B1667<ref name='LIB:EcoCyc10.6'/>, YdhR<ref name='LIB:EcoCyc10.6'/>, [[:Category:Complex:predicted mono-oxygenase|predicted mono-oxygenase]]<ref name='LIB:EcoCyc11.1'/>
''ECK1663, b1667, JW1657''<ref name='LIB:Riley_2006'/>, JW1657''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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predicted mono-oxygenase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted mono-oxygenase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:predicted mono-oxygenase|predicted mono-oxygenase]]<ref name='LIB:EcoCyc11.1'/>


Putative monooxygenase, function unknown; dimeric<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted protein<ref name='LIB:Riley_2006'/>, B1667<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdhR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1663, JW1657, b1667''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:ydhR|ydhR]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ydhR|ydhR]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ydhR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6895]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003484&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ydhR&loc=MG1655%3A1744724..1745029,W3110%3A1748414..1748719,DH10B%3A1835295..1835600,REL606%3A1723967..1724272,BW2952%3A1636783..1637088]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1636783&end=1637088&gene=ydhR&aa=matllqlhfafngpfgdamaeqlkplaesinqepgflwkvwteseknheaggiylftdeksalaylekhtarlknlgveevvakvfdvneplsqinqakla]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydhR+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ydhR]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
YdhR is structurally similar to YgiN and the ActVA-Orf6 hydroxyquinone monooxygenase. YdhR codon usage indicates a foreign gene, consistent with its location next to the valVW tRNA locus. Neighboring ydhS does not appear to be a foreign gene. The Swiss-Prot prediction of a signal peptide is not supported by SignalP.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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<references/>
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Latest revision as of 21:43, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ydhR

Gene Synonym(s)

ECK1663, b1667, JW1657[1], JW1657

Product Desc.

predicted mono-oxygenase[2][3];

Component of predicted mono-oxygenase[3]

Putative monooxygenase, function unknown; dimeric[4]

Product Synonyms(s)

predicted protein[1], B1667[2][1], YdhR[2][1] , ECK1663, JW1657, b1667

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ydhR[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


YdhR is structurally similar to YgiN and the ActVA-Orf6 hydroxyquinone monooxygenase. YdhR codon usage indicates a foreign gene, consistent with its location next to the valVW tRNA locus. Neighboring ydhS does not appear to be a foreign gene. The Swiss-Prot prediction of a signal peptide is not supported by SignalP.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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