metG:Evolution: Difference between revisions

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From ECOO157CYC  
From ECOO157CYC  


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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00133 PFAM:PF00133]
[http://pfam.janelia.org/family/PF01588 PF01588  Putative tRNA binding domain]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=47323 SUPERFAMILY:47323]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=50249 SUPERFAMILY:50249]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52374 SUPERFAMILY:52374]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11946:SF20 PTHR11946:SF20]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=57770 SUPERFAMILY:57770]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF09334 PF09334  tRNA synthetases class I (M)]
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[[EcoCyc]]
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EcoCyc:EG10586
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10586
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000579
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0581
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0006991
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:33, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000010004 (score: 1.000; bootstrap: 96%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000003202 (score: 1.000; bootstrap: 92%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G13780 (score: 1.000; bootstrap: 88%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000024487 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00028439 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00003415 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000000332 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000008111 (score: 1.000; bootstrap: 99%)
  • ENSCINP00000001558 (score: 0.261)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030219-83 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-504 (score: 0.982)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231297 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0034401 (score: 1.000; bootstrap: 96%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA13491-PA (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000006391 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000262027 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000014784 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Mus musculus

  • MGI:1345633 (score: 1.000; bootstrap: 93%)

From Inparanoid:20070104

Oryza gramene

  • Q9ZTS1 (score: 1.000; bootstrap: 85%)
  • Q5Z9M1 (score: 1.000; bootstrap: 85%)
  • Q94I35 (score: 0.535)
  • Q7XEX4 (score: 0.535)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000008732 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000034945 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YGR264C (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC17A34c (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000141534 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00013574001 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000039444 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

METG

From SHIGELLACYC

E. coli O157

METG

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01588 Putative tRNA binding domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:47323

Superfamily (EcoliWiki Page)

SUPERFAMILY:50249

Superfamily (EcoliWiki Page)

SUPERFAMILY:52374

Panther (EcoliWiki Page)

PTHR11946:SF20

Superfamily (EcoliWiki Page)

SUPERFAMILY:57770

Pfam (EcoliWiki Page)

PF09334 tRNA synthetases class I (M)

EcoCyc

EcoCyc:EG10586

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10586

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000579

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0581

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006991

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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