mdtG:Evolution: Difference between revisions

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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00083 PFAM:PF00083]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24003:SF264 PTHR24003:SF264]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=103473 SUPERFAMILY:103473]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF07690 PF07690  Major Facilitator Superfamily]
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[[EcoCyc]]
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EcoCyc:EG11343
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11343
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001314
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1319
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0003572
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:31, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000014718 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000026795 (score: 0.274)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000000507 (score: 1.000; bootstrap: 56%)
  • ENSAPMP00000026678 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G13740 (score: 1.000; bootstrap: 71%)
  • AT5G13750 (score: 1.000; bootstrap: 71%)
  • AT3G43790 (score: 0.534)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000020271 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00029933 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00018860 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000000269 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1410 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2344 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0190702 (score: 1.000; bootstrap: 57%)
  • DDB0185276 (score: 0.159)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0033958 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA11861-PA (score: 1.000; bootstrap: 64%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000031127 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000258436 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000005573 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000004597 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1915544 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000021944 (score: 1.000; bootstrap: 68%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000167313 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000017559 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000000209 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

E. coli O157

YCEE

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR24003:SF264

Superfamily (EcoliWiki Page)

SUPERFAMILY:103473

Pfam (EcoliWiki Page)

PF07690 Major Facilitator Superfamily

EcoCyc

EcoCyc:EG11343

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11343

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001314

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1319

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003572

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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