cnu:Quickview: Difference between revisions

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{{Tab On|Quickview|cnu}}{{Tab|Gene|cnu}}{{Tab|Gene Product(s)|cnu}}{{Tab|Expression|cnu}}{{Tab|Evolution|cnu}}{{Tab|On One Page|cnu}}{{TabsBottom}}
{{Tab On|Quickview|cnu}}{{Tab|Gene|cnu}}{{Tab|Gene Product(s)|cnu}}{{Tab|Expression|cnu}}{{Tab|Evolution|cnu}}{{Tab|On One Page|cnu}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[cnu:Gene|''cnu]]'' (synonyms: ''ydgT, ECK1621, b1625, JW1617'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>
''cnu''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[cnu:Gene_Product(s)|YdgT product]]<ref name='LIB:Riley_2006'/>: predicted regulator<ref name='LIB:Riley_2006'/>, B1625<ref name='LIB:EcoCyc10.6'/>, YdgT<ref name='LIB:EcoCyc10.6'/>, Cnu<ref name='LIB:EcoCyc10.6'/>
''ydgT, ECK1621, b1625, JW1617''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>, JW1617''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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H-NS- and StpA-binding protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
H-NS- and StpA-binding protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


 
OriC-binding complex H-NS/Cnu; binds 26 bp cnb site; also forms a complex with StpA; complex formation may protect HN-S and StpA from Lon degradation<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted regulator<ref name='LIB:Riley_2006'/>, B1625<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdgT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Cnu<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1621, JW1617, ydgT, b1625''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:ydgT|ydgT]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ydgT|ydgT]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=cnu&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6869]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003458&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=cnu&loc=MG1655%3A1702973..1703188,W3110%3A1706663..1706878,BW2952%3A1595032..1595247]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1595032&end=1595247&gene=cnu&aa=mtvqdyllkfrkisslesleklydhlnytltddqelinmyraadhrraelvsggrlfdlgqvpksvwhyvq]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=cnu+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=cnu]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
Cnu and Hha are paralogs. Overexpression of Cnu partially suppresses the hha effect on hylA expression.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:56, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

cnu

Gene Synonym(s)

ydgT, ECK1621, b1625, JW1617[1][2][3], JW1617

Product Desc.

H-NS- and StpA-binding protein[3][2]

OriC-binding complex H-NS/Cnu; binds 26 bp cnb site; also forms a complex with StpA; complex formation may protect HN-S and StpA from Lon degradation[4]

Product Synonyms(s)

predicted regulator[1], B1625[3][1], YdgT[3][1], Cnu[3][1] , ECK1621, JW1617, ydgT, b1625

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ydgT[3]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


Cnu and Hha are paralogs. Overexpression of Cnu partially suppresses the hha effect on hylA expression.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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