dapE:Evolution: Difference between revisions

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From ECOO157CYC  
From ECOO157CYC  


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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01546 PF01546  Peptidase family M20/M25/M40]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11014:SF5 PTHR11014:SF5]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53187 SUPERFAMILY:53187]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55031 SUPERFAMILY:55031]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF07687 PF07687  Peptidase dimerisation domain]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01546 PFAM:PF01546]
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01546 PFAM:PF01546]
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[[EcoCyc]]
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EcoCyc:EG10208
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10208
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000202
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0204
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0008142
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:34, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT4G38220 (score: 1.000; bootstrap: 100%)
  • AT1G44820 (score: 0.545)
  • AT1G44180 (score: 0.527)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000031070 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000028564 (score: 0.140)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000014619 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0037818 (score: 1.000; bootstrap: 100%)
  • FBgn0039049 (score: 0.641)
  • FBgn0039051 (score: 0.586)
  • FBgn0039052 (score: 0.577)
  • FBgn0039053 (score: 0.568)
  • FBgn0039050 (score: 0.567)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19815-PA (score: 1.000; bootstrap: 100%)
  • GA19818-PA (score: 0.746)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000232907 (score: 1.000; bootstrap: 51%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000004864 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000015488 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000015494 (score: 0.519)

From Inparanoid:20070104

Mus musculus

  • MGI:87913 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000015852 (score: 1.000; bootstrap: 48%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00023604001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

DAPE

From SHIGELLACYC

E. coli O157

DAPE

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01546 Peptidase family M20/M25/M40

Panther (EcoliWiki Page)

PTHR11014:SF5

Superfamily (EcoliWiki Page)

SUPERFAMILY:53187

Superfamily (EcoliWiki Page)

SUPERFAMILY:55031

Pfam (EcoliWiki Page)

PF07687 Peptidase dimerisation domain

PFAM (EcoliWiki Page)

PFAM:PF01546

EcoCyc

EcoCyc:EG10208

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10208

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000202

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0204

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0008142

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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