acs:Evolution: Difference between revisions

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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00501 PFAM:PF00501]
[http://pfam.janelia.org/family/PF00501 PF00501 AMP-binding enzyme]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24095:SF42 PTHR24095:SF42]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56801 SUPERFAMILY:56801]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF11930 PF11930  Domain of unknown function (DUF3448)]
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[[EcoCyc]]
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EcoCyc:EG11448
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11448
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001411
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1417
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0013337
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:37, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000014620 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000019939 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G36880 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000039040 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00026443 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00007969 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000011358 (score: 1.000; bootstrap: 76%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000017976 (score: 1.000; bootstrap: 52%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040718-388 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040718-425 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231684 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0012034 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21752-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000014052 (score: 1.000; bootstrap: 60%)
  • ENSGALP00000016604 (score: 0.251)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000253382 (score: 1.000; bootstrap: 92%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000023581 (score: 1.000; bootstrap: 92%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000003174 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Mus musculus

  • MGI:1890410 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Oryza gramene

  • Q6H798 (score: 1.000; bootstrap: 100%)
  • Q7X8V5 (score: 0.668)
  • Q7F8W1 (score: 0.464)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000023022 (score: 1.000; bootstrap: 69%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000025612 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLR153C (score: 1.000; bootstrap: 100%)
  • YAL054C (score: 0.198)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC1912c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000173368 (score: 1.000; bootstrap: 99%)
  • NEWSINFRUP00000163774 (score: 0.431)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00027672001 (score: 1.000; bootstrap: 77%)
  • GSTENP00013110001 (score: 0.088)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000016296 (score: 1.000; bootstrap: 82%)
  • ENSXETP00000009352 (score: 0.409)

From Inparanoid:20070104

E. coli O157

ACS

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00501 AMP-binding enzyme

Panther (EcoliWiki Page)

PTHR24095:SF42

Superfamily (EcoliWiki Page)

SUPERFAMILY:56801

Pfam (EcoliWiki Page)

PF11930 Domain of unknown function (DUF3448)

EcoCyc

EcoCyc:EG11448

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11448

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001411

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1417

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013337

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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