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{{Tab On|Quickview|racR}}{{Tab|Gene|racR}}{{Tab|Gene Product(s)|racR}}{{Tab|Expression|racR}}{{Tab|Evolution|racR}}{{Tab|On One Page|racR}}{{TabsBottom}}
{{Tab On|Quickview|racR}}{{Tab|Gene|racR}}{{Tab|Gene Product(s)|racR}}{{Tab|Expression|racR}}{{Tab|Evolution|racR}}{{Tab|On One Page|racR}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[racR:Gene|''racR]]'' (synonyms: ''ECK1354, b1356, JW1351, ydaR, rarC'')<ref name='LIB:Riley_2006'/>
''racR''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[racR:Gene_Product(s)|RacR product]]<ref name='LIB:Riley_2006'/>: Rac prophage; predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B1356<ref name='LIB:EcoCyc10.6'/>, RacR<ref name='LIB:EcoCyc10.6'/>, YdaR<ref name='LIB:EcoCyc10.6'/>, RarC<ref name='LIB:EcoCyc10.6'/>
''ECK1354, b1356, JW1351, ydaR, rarC''<ref name='LIB:Riley_2006'/>, cohR''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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hypothetical protein<ref name='LIB:EcoCyc10.6'/>hypothetical protein; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>
hypothetical protein<ref name='LIB:EcoCyc10.6'/>; hypothetical protein; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>
 


Rac prophage repressor, cI-like<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''Rac prophage; predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B1356<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RacR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RarC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , cohR, ECK1354, JW1351, ydaR, b1356''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:racR|racR]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:racR|racR]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=racR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6680]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003275&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=racR&loc=MG1655%3A1418265..1417789,W3110%3A1421955..1421479,DH10B%3A1507661..1507185,BW2952%3A1309848..1310324]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1309848&end=1310324&gene=racR&aa=mlsgkdlgraieqainkkiasgsvkskaevarhfkvqppsiydwikkgsiskdklpelwrffsdvvgpehwglneypiptptnsdtkselldinnlyqaasdeiraivafllsgnatepdwvdhdvrayiaamemkvgkylkaleserksqnitktgt]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=racR+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=racR]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
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racR encodes a function repressor of the Rac prophage, personal communications, A.J. Clark, February, 1994, (preliminary results), and June, 1998. Rac integrase and repressor function and the Rac prophage can be induced to excise from the E. coli chromosome, but does not form viable virions. racR was identified in a personal communication of unpublished DNA sequence (2527 bp) and annotation from A.J. Clark, H. Samra, J. Li, C.C. Chu, C.S. Laufer and J.B. Hays, November, 1993; revised June, 1996.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:54, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

racR

Gene Synonym(s)

ECK1354, b1356, JW1351, ydaR, rarC[1], cohR

Product Desc.

hypothetical protein[2]; hypothetical protein; predicted DNA-binding transcriptional regulator[3]

Rac prophage repressor, cI-like[4]

Product Synonyms(s)

Rac prophage; predicted DNA-binding transcriptional regulator[1], B1356[2][1], RacR[2][1], YdaR[2][1], RarC[2][1] , cohR, ECK1354, JW1351, ydaR, b1356

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): racR[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


racR encodes a function repressor of the Rac prophage, personal communications, A.J. Clark, February, 1994, (preliminary results), and June, 1998. Rac integrase and repressor function and the Rac prophage can be induced to excise from the E. coli chromosome, but does not form viable virions. racR was identified in a personal communication of unpublished DNA sequence (2527 bp) and annotation from A.J. Clark, H. Samra, J. Li, C.C. Chu, C.S. Laufer and J.B. Hays, November, 1993; revised June, 1996.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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