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{{Tab On|Quickview|ycdT}}{{Tab|Gene|ycdT}}{{Tab|Gene Product(s)|ycdT}}{{Tab|Expression|ycdT}}{{Tab|Evolution|ycdT}}{{Tab|On One Page|ycdT}}{{TabsBottom}}
{{Tab On|Quickview|ycdT}}{{Tab|Gene|ycdT}}{{Tab|Gene Product(s)|ycdT}}{{Tab|Expression|ycdT}}{{Tab|Evolution|ycdT}}{{Tab|On One Page|ycdT}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ycdT:Gene|''ycdT]]'' (synonyms: ''ECK1015, b1025, JW5143'')<ref name='LIB:Riley_2006'/>
''ycdT''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ycdT:Gene_Product(s)|YcdT product]]<ref name='LIB:Riley_2006'/>: predicted diguanylate cyclase<ref name='LIB:Riley_2006'/>, B1025<ref name='LIB:EcoCyc10.6'/>, YcdT<ref name='LIB:EcoCyc10.6'/>
''ECK1015, b1025, JW5143''<ref name='LIB:Riley_2006'/>, JW5143''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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predicted diguanylate cyclase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted diguanylate cyclase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


 
Probable diguanylate cyclase, function unknown<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted diguanylate cyclase<ref name='LIB:Riley_2006'/>, B1025<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1015, JW5143, b1025''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:ycdT|ycdT]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ycdT|ycdT]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ycdT&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6532]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003130&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ycdT&loc=MG1655%3A1092099..1093457,W3110%3A1093298..1094656,DH10B%3A1146027..1148721,REL606%3A1109161..1110519,BW2952%3A995843..997201]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=995843&end=997201&gene=ycdT&aa=mekdylrisstvlvsllfglalvlvnswfnqpgveevvprstylmvmialffidtvafifmqlyfiydrrqfsncvlslaflscliyfvitviiiqqiieerltssvvqndiaiyylfrqmslciliflalvnkvsentkqrnlfskkmtlcislffvfggpivahilsshyesynlhiaeltnengqvvwkasyvtimifmwltllsvnlyfnglrydiwngvtviafcavlynisllfmsrysvstwyisrtievvskltvmvifmchifsalrvtkniahrdpltnifnrnyffneltvqsasaqktpycvmimdidhfkkvndtwghpvgdqviktvvniigksirpddllarvggeefgvlltdidterakalaerirenverltgdnpeyaipqkvtisigavvtqenalnpneiyrladnalyeaketgrnkvvvrdvvnfcesp]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ycdT+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ycdT]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
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YcdT is homolgous to Y. pestis hemin storage gene hmsT, but is unable to complement hmsT mutations.  Shown not to be a regulator of the divergent pgaABCD operon.  Codon usage indicates ycdT is an alien (horizontal) gene. YcdT has a C-terminal putative diguanylate cyclase GGDEF domain.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:43, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ycdT

Gene Synonym(s)

ECK1015, b1025, JW5143[1], JW5143

Product Desc.

predicted diguanylate cyclase[2][3]

Probable diguanylate cyclase, function unknown[4]

Product Synonyms(s)

predicted diguanylate cyclase[1], B1025[2][1], YcdT[2][1] , ECK1015, JW5143, b1025

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ycdT[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


YcdT is homolgous to Y. pestis hemin storage gene hmsT, but is unable to complement hmsT mutations. Shown not to be a regulator of the divergent pgaABCD operon. Codon usage indicates ycdT is an alien (horizontal) gene. YcdT has a C-terminal putative diguanylate cyclase GGDEF domain.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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