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{{Tab On|Quickview|pgaB}}{{Tab|Gene|pgaB}}{{Tab|Gene Product(s)|pgaB}}{{Tab|Expression|pgaB}}{{Tab|Evolution|pgaB}}{{Tab|On One Page|pgaB}}{{TabsBottom}}
{{Tab On|Quickview|pgaB}}{{Tab|Gene|pgaB}}{{Tab|Gene Product(s)|pgaB}}{{Tab|Expression|pgaB}}{{Tab|Evolution|pgaB}}{{Tab|On One Page|pgaB}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[pgaB:Gene|''pgaB]]'' (synonyms: ''ycdR, ECK1013, b1023, JW5142, hmsF'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''pgaB''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[pgaB:Gene_Product(s)|YcdR product]]<ref name='LIB:Riley_2006'/>: predicted enzyme associated with biofilm formation<ref name='LIB:Riley_2006'/>, B1023<ref name='LIB:EcoCyc10.6'/>, YcdR<ref name='LIB:EcoCyc10.6'/>, HmsF<ref name='LIB:EcoCyc10.6'/>, PgaB<ref name='LIB:EcoCyc10.6'/>
''ycdR, ECK1013, b1023, JW5142, hmsF''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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predicted enzyme associated with biofilm formation<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted enzyme associated with biofilm formation<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


 
Biofilm adhesin polysaccharide PGA export; lipoprotein; polysaccharide deacetylase activity needed for export<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted enzyme associated with biofilm formation<ref name='LIB:Riley_2006'/>, B1023<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HmsF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PgaB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1013, JW5142, ycdR, b1023''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:pgaABCD|pgaABCD]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:pgaABCD|pgaABCD]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=pgaB&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6530]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003128&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=pgaB&loc=MG1655%3A1089080..1087062,W3110%3A1090279..1088261,DH10B%3A1143008..1140990,REL606%3A1104124..1106142,BW2952%3A990030..992048]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=990030&end=992048&gene=pgaB&aa=mlrngnkyllmlvsiimltacisqsrtsfippqdresllaeqpwphngfvaiswhnvedeaadqrfmsvrtsalreqfawlrengyqpvsiaqireahrggkplpekavvltfddgyqsfytrvfpilqafqwpavwapvgswvdtpadkqvkfgdelvdreyfatwqqvrevarsrlvelashtwnshygiqanatgsllpvyvnrayftdharyetaaeyrerirldavkmteylrtkvevnphvfvwpygeangiaieelkklgydmfftlesglanasqldsiprvliannpslkefaqqiitvqekspqrimhidldyvydenlqqmdrnidvliqrvkdmqistvylqafadpdgdglvkevwfpnrllpmkadifsrvawqlrtrsgvniyawmpvlswdldptltrvkylptgekkaqihpeqyhrlspfddrvraqvgmlyedlaghaafdgilfhddallsdyedasapaitayqqagfsgslseirqnpeqfkqwarfksraltdftlelsarvkairgphiktarnifalpviqpeseawfaqnyadflksydwtaimampylegvaeksadqwliqltnqiknipqakdksilelqaqnwqkngqhqaissqqlahwmsllqlngvknygyypdnflhnqpeidlirpefstawypknd]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=pgaB+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=pgaB]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
PGA is a biofilm adhesin polysaccharide. PgaB is homologous to Y. pestis hemin storage protein HmsF, but is unable to complement hmsF mutations. First 20 aa are a type II signal peptide. Codon usage indicates pgaB is an alien (horizontal) gene. CsrA regulon. yadE paralog. PGA is oly-beta-1,6-N-acetyl-D-glucosamine.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:47, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

pgaB

Gene Synonym(s)

ycdR, ECK1013, b1023, JW5142, hmsF[1][2]

Product Desc.

predicted enzyme associated with biofilm formation[2][3]

Biofilm adhesin polysaccharide PGA export; lipoprotein; polysaccharide deacetylase activity needed for export[4]

Product Synonyms(s)

predicted enzyme associated with biofilm formation[1], B1023[2][1], YcdR[2][1], HmsF[2][1], PgaB[2][1] , ECK1013, JW5142, ycdR, b1023

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): pgaABCD[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


PGA is a biofilm adhesin polysaccharide. PgaB is homologous to Y. pestis hemin storage protein HmsF, but is unable to complement hmsF mutations. First 20 aa are a type II signal peptide. Codon usage indicates pgaB is an alien (horizontal) gene. CsrA regulon. yadE paralog. PGA is oly-beta-1,6-N-acetyl-D-glucosamine.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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