yibF:Evolution: Difference between revisions

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<noinclude>{{TabsTop}}
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{{Tab|Quickview|yibF}}{{Tab|Gene|yibF}}{{Tab|Gene Product(s)|yibF}}{{Tab|Expression|yibF}}{{Tab On|Evolution|yibF}}{{Tab|On One Page|yibF}}{{TabsBottom}}
{{Tab|Quickview|yibF}}{{Tab|Gene|yibF}}{{Tab|Gene Product(s)|yibF}}{{Tab|Expression|yibF}}{{Tab On|Evolution|yibF}}{{Tab|On One Page|yibF}}{{TabsBottom}}
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==Homologs in Other Organisms==
==Homologs in Other Organisms==
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<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="Y46ac054004202"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
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YIBF
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From ECOO157CYC
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.51147.Y46ac054004202&page=51147&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418049&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418049&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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==Families==
==Families==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="O46ac05454fd3f"  class=" tableEdit Gene_accessions_table" 
|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02798 PF02798  Glutathione S-transferase, N-terminal domain]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00043 PF00043  Glutathione S-transferase, C-terminal domain]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=47616 SUPERFAMILY:47616]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52833 SUPERFAMILY:52833]
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|-  
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF02798 PFAM:PF02798]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11260:SF41 PTHR11260:SF41]
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[[EcoCyc]]
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EcoCyc:EG11762
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EcoGene]]
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EcoGene:EG11762
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[RegulonDB]]
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RegulonDB:ECK120001698
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EchoBASE]]
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EchoBASE:EB1712
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
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ASAP:ABE-0011736
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
|- class="tableEdit_footer"
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==Links==
==Links==
{{Evolution_links_default}}
{{BacktoTop}}
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==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:36, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT2G29450 (score: 1.000; bootstrap: 100%)
  • AT2G29440 (score: 0.775)
  • AT2G29490 (score: 0.682)
  • AT2G29460 (score: 0.659)
  • AT2G29480 (score: 0.638)
  • AT2G29470 (score: 0.587)
  • AT2G29420 (score: 0.488)
  • AT3G09270 (score: 0.359)
  • AT1G59700 (score: 0.240)
  • AT5G62480 (score: 0.233)
  • AT1G59670 (score: 0.222)
  • AT1G74590 (score: 0.220)
  • AT1G27130 (score: 0.217)
  • AT1G69920 (score: 0.191)
  • AT1G10370 (score: 0.181)
  • AT1G69930 (score: 0.165)
  • AT1G27140 (score: 0.163)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000013573 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000013676 (score: 0.604)

From Inparanoid:20070104

Oryza gramene

  • O04941 (score: 1.000; bootstrap: 100%)
  • Q8LL15 (score: 0.947)
  • Q8LGS9 (score: 0.947)
  • Q9FUE4 (score: 0.659)
  • Q6WSC3 (score: 0.657)
  • Q8S714 (score: 0.654)
  • Q9FQ97 (score: 0.654)
  • Q8LGS8 (score: 0.647)
  • Q9SB98 (score: 0.642)
  • Q8S715 (score: 0.642)
  • Q9ZS20 (score: 0.624)
  • Q945X0 (score: 0.617)
  • Q8S7T0 (score: 0.614)
  • Q945W9 (score: 0.614)
  • Q8S712 (score: 0.612)
  • Q8S703 (score: 0.604)
  • Q9ZS19 (score: 0.602)
  • Q6WSC2 (score: 0.599)
  • Q9FQ99 (score: 0.596)
  • Q8RUJ2 (score: 0.596)
  • Q9FUE3 (score: 0.594)
  • Q8RUS1 (score: 0.594)
  • Q8S702 (score: 0.584)
  • Q945W6 (score: 0.581)
  • Q945W4 (score: 0.581)
  • Q8S710 (score: 0.576)
  • Q9FQA4 (score: 0.569)
  • Q945W2 (score: 0.566)
  • Q8S711 (score: 0.564)
  • Q9FUE2 (score: 0.559)
  • Q945X1 (score: 0.556)
  • Q9FQB7 (score: 0.541)
  • Q8H8I8 (score: 0.536)
  • Q8S717 (score: 0.524)
  • Q9FQA2 (score: 0.489)
  • Q9FQB2 (score: 0.489)
  • Q8RW01 (score: 0.486)
  • Q9FQA1 (score: 0.486)
  • Q9FQA9 (score: 0.479)
  • Q06398 (score: 0.471)
  • Q945W5 (score: 0.469)
  • Q8RZY8 (score: 0.469)
  • Q8LMJ0 (score: 0.469)
  • Q8L4V6 (score: 0.464)
  • Q8S718 (score: 0.459)
  • Q8LGN6 (score: 0.451)
  • Q9FQB4 (score: 0.451)
  • Q9FQA7 (score: 0.449)
  • Q8S9U5 (score: 0.444)
  • Q8W2T8 (score: 0.444)
  • Q9FQA6 (score: 0.431)
  • Q69LE6 (score: 0.416)
  • Q6QN17 (score: 0.414)
  • Q9FQB3 (score: 0.406)
  • Q8RW00 (score: 0.386)
  • Q9FQA8 (score: 0.368)
  • Q9FQA5 (score: 0.363)
  • Q8LMI9 (score: 0.356)
  • Q9FQA0 (score: 0.353)
  • Q6QN18 (score: 0.351)
  • Q945W3 (score: 0.348)
  • Q8S7S9 (score: 0.346)
  • Q6AUB4 (score: 0.316)
  • Q9FQB9 (score: 0.313)
  • Q9FQA3 (score: 0.303)
  • Q9FQ98 (score: 0.298)
  • Q9AV55 (score: 0.296)
  • Q9FQB6 (score: 0.291)
  • Q8RZB1 (score: 0.288)
  • Q9ZP60 (score: 0.278)
  • Q9FQB0 (score: 0.276)
  • Q5JKX6 (score: 0.271)
  • Q851H8 (score: 0.268)
  • Q93WY5 (score: 0.263)
  • Q9FQB5 (score: 0.261)
  • Q5JKY3 (score: 0.258)
  • Q5GAR4 (score: 0.253)
  • P50472 (score: 0.251)
  • Q9FQB1 (score: 0.251)
  • Q8L576 (score: 0.251)
  • Q5JKY4 (score: 0.251)
  • Q8RZA8 (score: 0.248)
  • Q945W8 (score: 0.243)
  • Q8GSQ7 (score: 0.241)
  • Q8RZB3 (score: 0.238)
  • Q5GAV2 (score: 0.238)
  • Q9FQB8 (score: 0.236)
  • Q6R4K3 (score: 0.158)
  • Q6R4J7 (score: 0.158)
  • Q6R4I9 (score: 0.158)
  • Q6R4K6 (score: 0.158)
  • Q6R4K5 (score: 0.158)
  • Q6R4J8 (score: 0.155)
  • Q6R4J1 (score: 0.153)
  • Q6R4J6 (score: 0.153)
  • Q6R4I6 (score: 0.153)
  • Q6R4K8 (score: 0.150)
  • Q6R4J0 (score: 0.150)
  • Q6R4I1 (score: 0.150)
  • Q93W19 (score: 0.150)
  • Q93W18 (score: 0.150)
  • Q93VZ7 (score: 0.148)
  • Q6R4J2 (score: 0.148)
  • Q94FD1 (score: 0.145)
  • Q6QHA4 (score: 0.145)
  • Q93W69 (score: 0.138)
  • Q6R4H9 (score: 0.118)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000037094 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

YIBF

From SHIGELLACYC

E. coli O157

YIBF

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02798 Glutathione S-transferase, N-terminal domain

Pfam (EcoliWiki Page)

PF00043 Glutathione S-transferase, C-terminal domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:47616

Superfamily (EcoliWiki Page)

SUPERFAMILY:52833

Panther (EcoliWiki Page)

PTHR11260:SF41

EcoCyc

EcoCyc:EG11762

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11762

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001698

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1712

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011736

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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