yhhA:Evolution: Difference between revisions

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{{Tab|Quickview|yhhA}}{{Tab|Gene|yhhA}}{{Tab|Gene Product(s)|yhhA}}{{Tab|Expression|yhhA}}{{Tab On|Evolution|yhhA}}{{Tab|On One Page|yhhA}}{{TabsBottom}}
{{Tab|Quickview|yhhA}}{{Tab|Gene|yhhA}}{{Tab|Gene Product(s)|yhhA}}{{Tab|Expression|yhhA}}{{Tab On|Evolution|yhhA}}{{Tab|On One Page|yhhA}}{{TabsBottom}}
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==Homologs in Other Organisms==
==Homologs in Other Organisms==
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{|  id="J46ac01d5ada8c"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
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YHHA
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From ECOO157CYC
 
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|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.50849.J46ac01d5ada8c&page=50849&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
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{{Evolution_homologs_table_help}}


===Do-It-Yourself Web Tools===
<protect><!--Families_notes--></protect>
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417905&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
 
<protect><!--Homology_notes--></protect>
===Notes===
===Notes===


==Families==
==Families==
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{|  id="J4c604f84b3968"  class=" tableEdit Evolution_families_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Database!!Accession!!Notes
|-
|-  
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''Dictyostelium discoideum'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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* DDB0201766 (score: 1.000; bootstrap: 61%)
[http://pfam.janelia.org/family/PF10956 PF10956  Protein of unknown function (DUF2756)]
* DDB0220099 (score: 1.000; bootstrap: 60%)
* DDB0217030 (score: 0.161)
* DDB0190583 (score: 0.158)
* DDB0188057 (score: 0.153)
* DDB0214889 (score: 0.133)
* DDB0168830 (score: 0.120)
* DDB0205116 (score: 0.120)
* DDB0188232 (score: 0.096)
* DDB0202909 (score: 0.095)
* DDB0189922 (score: 0.089)
* DDB0206250 (score: 0.084)
* DDB0206274 (score: 0.084)
* DDB0219861 (score: 0.082)
* DDB0219388 (score: 0.081)
* DDB0169494 (score: 0.081)
* DDB0189354 (score: 0.079)
* DDB0191425 (score: 0.077)
* DDB0168717 (score: 0.077)
* DDB0220500 (score: 0.075)
* DDB0216874 (score: 0.074)
* DDB0231041 (score: 0.072)
* DDB0215321 (score: 0.072)
* DDB0217696 (score: 0.070)
* DDB0184128 (score: 0.067)
* DDB0189556 (score: 0.067)
* DDB0202277 (score: 0.065)
* DDB0206028 (score: 0.065)
* DDB0232946 (score: 0.065)
* DDB0217664 (score: 0.065)
* DDB0190016 (score: 0.064)
* DDB0220664 (score: 0.062)
* DDB0185187 (score: 0.062)
* DDB0215009 (score: 0.061)
* DDB0187452 (score: 0.060)
* DDB0191424 (score: 0.060)
* DDB0206452 (score: 0.059)
* DDB0204963 (score: 0.059)
* DDB0185770 (score: 0.058)
* DDB0220000 (score: 0.058)
* DDB0188781 (score: 0.056)
* DDB0202068 (score: 0.056)
* DDB0205813 (score: 0.056)
* DDB0216408 (score: 0.056)
* DDB0189717 (score: 0.056)
* DDB0233012 (score: 0.055)
* DDB0191524 (score: 0.055)
* DDB0187373 (score: 0.055)
* DDB0231499 (score: 0.054)
* DDB0185432 (score: 0.053)
* DDB0219302 (score: 0.052)  
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From Inparanoid:20070104
   
|-
 
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|- class="tableEdit_footer"
''Shigella flexneri''  
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.50849.J4c604f84b3968&page=50849&pagename={{FULLPAGENAMEE}}&type=0&template=Evolution_families_table edit table]</span> || ||
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YHHA
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From SHIGELLACYC
|-
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''E. coli'' O157
|
YHHA
|
From ECOO157CYC
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..S46a08dfe05239&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
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{{Evolution_families_table_help}}
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===




==Links==
==Links==
{{Evolution_links_default}}
{{BacktoTop}}
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==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Dictyostelium discoideum ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Dictyostelium discoideum ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 20:57, 16 August 2011

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Dictyostelium discoideum

  • DDB0201766 (score: 1.000; bootstrap: 61%)
  • DDB0220099 (score: 1.000; bootstrap: 60%)
  • DDB0217030 (score: 0.161)
  • DDB0190583 (score: 0.158)
  • DDB0188057 (score: 0.153)
  • DDB0214889 (score: 0.133)
  • DDB0168830 (score: 0.120)
  • DDB0205116 (score: 0.120)
  • DDB0188232 (score: 0.096)
  • DDB0202909 (score: 0.095)
  • DDB0189922 (score: 0.089)
  • DDB0206250 (score: 0.084)
  • DDB0206274 (score: 0.084)
  • DDB0219861 (score: 0.082)
  • DDB0219388 (score: 0.081)
  • DDB0169494 (score: 0.081)
  • DDB0189354 (score: 0.079)
  • DDB0191425 (score: 0.077)
  • DDB0168717 (score: 0.077)
  • DDB0220500 (score: 0.075)
  • DDB0216874 (score: 0.074)
  • DDB0231041 (score: 0.072)
  • DDB0215321 (score: 0.072)
  • DDB0217696 (score: 0.070)
  • DDB0184128 (score: 0.067)
  • DDB0189556 (score: 0.067)
  • DDB0202277 (score: 0.065)
  • DDB0206028 (score: 0.065)
  • DDB0232946 (score: 0.065)
  • DDB0217664 (score: 0.065)
  • DDB0190016 (score: 0.064)
  • DDB0220664 (score: 0.062)
  • DDB0185187 (score: 0.062)
  • DDB0215009 (score: 0.061)
  • DDB0187452 (score: 0.060)
  • DDB0191424 (score: 0.060)
  • DDB0206452 (score: 0.059)
  • DDB0204963 (score: 0.059)
  • DDB0185770 (score: 0.058)
  • DDB0220000 (score: 0.058)
  • DDB0188781 (score: 0.056)
  • DDB0202068 (score: 0.056)
  • DDB0205813 (score: 0.056)
  • DDB0216408 (score: 0.056)
  • DDB0189717 (score: 0.056)
  • DDB0233012 (score: 0.055)
  • DDB0191524 (score: 0.055)
  • DDB0187373 (score: 0.055)
  • DDB0231499 (score: 0.054)
  • DDB0185432 (score: 0.053)
  • DDB0219302 (score: 0.052)

From Inparanoid:20070104

Shigella flexneri

YHHA

From SHIGELLACYC

E. coli O157

YHHA

From ECOO157CYC

edit table


Notes

Families

[back to top]


See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes

Pfam (EcoliWiki Page)

PF10956 Protein of unknown function (DUF2756)


edit table


Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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