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{{Tab On|Quickview|ybgP}}{{Tab|Gene|ybgP}}{{Tab|Gene Product(s)|ybgP}}{{Tab|Expression|ybgP}}{{Tab|Evolution|ybgP}}{{Tab|On One Page|ybgP}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ybgP:Gene|''ybgP]]'' (synonyms: ''ECK0706, b0717, JW0707'')<ref name='LIB:Riley_2006'/>
''ybgP''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ybgP:Gene_Product(s)|YbgP product]]<ref name='LIB:Riley_2006'/>: predicted assembly protein<ref name='LIB:Riley_2006'/>, B0717<ref name='LIB:EcoCyc10.6'/>, YbgP<ref name='LIB:EcoCyc10.6'/>
''ECK0706, b0717, JW0707''<ref name='LIB:Riley_2006'/>, JW0707''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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putative chaperone<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
putative chaperone<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


 
Putative periplasmic pilus chaperone, function unknown<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted assembly protein<ref name='LIB:Riley_2006'/>, B0717<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbgP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0706, JW0707, b0717''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:ybgO|ybgO]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ybgO|ybgO]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ybgP&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6386]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002986&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ybgP&loc=MG1655%3A748930..748202,W3110%3A750129..749401,DH10B%3A801522..800794,BW2952%3A650962..651690]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=650962&end=651690&gene=ybgP&aa=mtfikglplmlltislgcnaavqpdrtrivfnandkatslrienqsdklpylayswienekgeksdallvalppiqrlepkatsqvrvvkqasttqlpgdretlffynmreippapdkssdhailqvaiqsriklfwrpaalrkkagekvelqlqvsqqgnqltlknptayyltiaylgrnekgvlpgfktvmvapfstvntntgsysgsqfylgymddygalrmttlncsgqcrlqaveak]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ybgP+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ybgP]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
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Probable false positive lipoprotein prediction, Cys not conserved. First 20 aa are a predicted type I signal peptide.  YbgP has  Ig-like domains: pfam PF00345 aligns to N-terminal residues 21-143, and pfam PF02753 aligns to C-terminal residues 150-223.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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<references/>
<references/>
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Latest revision as of 21:44, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ybgP

Gene Synonym(s)

ECK0706, b0717, JW0707[1], JW0707

Product Desc.

putative chaperone[2][3]

Putative periplasmic pilus chaperone, function unknown[4]

Product Synonyms(s)

predicted assembly protein[1], B0717[2][1], YbgP[2][1] , ECK0706, JW0707, b0717

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ybgO[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


Probable false positive lipoprotein prediction, Cys not conserved. First 20 aa are a predicted type I signal peptide. YbgP has Ig-like domains: pfam PF00345 aligns to N-terminal residues 21-143, and pfam PF02753 aligns to C-terminal residues 150-223.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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