exuT:Evolution: Difference between revisions

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<noinclude>{{TabsTop}}
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{{Tab|Quickview|exuT}}{{Tab|Gene|exuT}}{{Tab|Gene Product(s)|exuT}}{{Tab|Expression|exuT}}{{Tab On|Evolution|exuT}}{{Tab|On One Page|exuT}}{{TabsBottom}}
{{Tab|Quickview|exuT}}{{Tab|Gene|exuT}}{{Tab|Gene Product(s)|exuT}}{{Tab|Expression|exuT}}{{Tab On|Evolution|exuT}}{{Tab|On One Page|exuT}}{{TabsBottom}}
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==Homologs in Other Organisms==
==Homologs in Other Organisms==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="K46abf36aa3733"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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From Inparanoid:20070104  
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
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EXUT
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From ECOO157CYC
 
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417564&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417564&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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==Families==
==Families==
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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-  
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF07690 PFAM:PF07690]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11662:SF32 PTHR11662:SF32]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=103473 SUPERFAMILY:103473]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF07690 PF07690  Major Facilitator Superfamily]
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[[EcoCyc]]
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EcoCyc:EG12738
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12738
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002376
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2594
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0010171
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
|- class="tableEdit_footer"
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==Links==
==Links==
{{Evolution_links_default}}
{{BacktoTop}}
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==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Apis mellifera ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Drosophila pseudoobscura ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Saccharomyces cerevisiae ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Apis mellifera ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Drosophila pseudoobscura ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Saccharomyces cerevisiae ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:35, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000024771 (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00017398 (score: 1.000; bootstrap: 70%)
  • WBGene00022788 (score: 0.192)
  • WBGene00012130 (score: 0.123)
  • WBGene00015333 (score: 0.111)
  • WBGene00017798 (score: 0.076)
  • WBGene00017681 (score: 0.075)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0030452 (score: 1.000; bootstrap: 94%)
  • FBgn0034392 (score: 1.000; bootstrap: 94%)
  • FBgn0038799 (score: 1.000; bootstrap: 89%)
  • FBgn0034394 (score: 0.422)
  • FBgn0010651 (score: 0.370)
  • FBgn0033234 (score: 0.290)
  • FBgn0034784 (score: 0.287)
  • FBgn0034783 (score: 0.278)
  • FBgn0050272 (score: 0.270)
  • FBgn0050265 (score: 0.267)
  • FBgn0034782 (score: 0.262)
  • FBgn0033048 (score: 0.244)
  • FBgn0024315 (score: 0.241)
  • FBgn0039886 (score: 0.238)
  • FBgn0031424 (score: 0.225)
  • FBgn0034785 (score: 0.224)
  • FBgn0010497 (score: 0.204)
  • FBgn0029727 (score: 0.198)
  • FBgn0031645 (score: 0.195)
  • FBgn0031307 (score: 0.165)
  • FBgn0028513 (score: 0.164)
  • FBgn0034490 (score: 0.144)
  • FBgn0016684 (score: 0.140)
  • FBgn0058263 (score: 0.073)
  • FBgn0025684 (score: 0.053)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18114-PA (score: 1.000; bootstrap: 93%)
  • GA18084-PA (score: 1.000; bootstrap: 87%)
  • GA13487-PA (score: 1.000; bootstrap: 87%)
  • GA13486-PA (score: 0.396)
  • GA21326-PA (score: 0.356)
  • GA15741-PA (score: 0.320)
  • GA22061-PA (score: 0.319)
  • GA15735-PA (score: 0.288)
  • GA20823-PA (score: 0.274)
  • GA15178-PA (score: 0.250)
  • GA15786-PA (score: 0.238)
  • GA17586-PA (score: 0.236)
  • GA18795-PA (score: 0.227)
  • GA20000-PA (score: 0.223)
  • GA18388-PA (score: 0.203)
  • GA22101-PA (score: 0.187)
  • GA22082-PA (score: 0.169)
  • GA10155-PA (score: 0.163)
  • GA13728-PA (score: 0.057)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000013621 (score: 1.000; bootstrap: 93%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLR004C (score: 1.000; bootstrap: 100%)
  • YJR152W (score: 0.190)
  • YLL055W (score: 0.140)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000044341 (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

Shigella flexneri

EXUT

From SHIGELLACYC

E. coli O157

EXUT

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR11662:SF32

Superfamily (EcoliWiki Page)

SUPERFAMILY:103473

Pfam (EcoliWiki Page)

PF07690 Major Facilitator Superfamily

EcoCyc

EcoCyc:EG12738

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12738

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002376

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2594

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010171

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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