qseB:Evolution: Difference between revisions

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{{Tab|Quickview|qseB}}{{Tab|Gene|qseB}}{{Tab|Gene Product(s)|qseB}}{{Tab|Expression|qseB}}{{Tab On|Evolution|qseB}}{{Tab|On One Page|qseB}}{{TabsBottom}}
{{Tab|Quickview|qseB}}{{Tab|Gene|qseB}}{{Tab|Gene Product(s)|qseB}}{{Tab|Expression|qseB}}{{Tab On|Evolution|qseB}}{{Tab|On One Page|qseB}}{{TabsBottom}}
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==Homologs in Other Organisms==
==Homologs in Other Organisms==
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{|  id="T46abf1896d813"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
|
|
''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
|
YGIX
|
From ECOO157CYC
|-
|
''Arabidopsis thaliana'' 
|
* AT4G31920 (score: 1.000; bootstrap: 100%)
* AT2G01760 (score: 1.000; bootstrap: 100%)
* AT2G25180 (score: 0.521)
* AT3G16857 (score: 0.312)
* AT4G16110 (score: 0.186)
* AT5G49240 (score: 0.157)
* AT1G49190 (score: 0.149)
* AT3G62670 (score: 0.115)
* AT4G18020 (score: 0.115)
* AT5G07210 (score: 0.102)
* AT2G27070 (score: 0.098)
|
From Inparanoid:20070104
|-
|
''Dictyostelium discoideum'' 
|
* DDB0183884 (score: 1.000; bootstrap: 71%)
* DDB0191388 (score: 1.000; bootstrap: 62%)
* DDB0220512 (score: 0.106)
* DDB0231984 (score: 0.080)
* DDB0185194 (score: 0.077)
* DDB0187191 (score: 0.076)
* DDB0191306 (score: 0.075)
* DDB0204819 (score: 0.075)
* DDB0218392 (score: 0.066)
* DDB0218263 (score: 0.065)
* DDB0187593 (score: 0.065)
* DDB0185325 (score: 0.061)
* DDB0217795 (score: 0.060)
* DDB0220485 (score: 0.058)
* DDB0191407 (score: 0.058)
* DDB0188118 (score: 0.058)
* DDB0216671 (score: 0.056)
* DDB0206390 (score: 0.052)
|
From Inparanoid:20070104
|-
|
''Oryza gramene'' 
|
* Q6H805 (score: 1.000; bootstrap: 63%)
* Q94LW1 (score: 0.703)
* Q5SML5 (score: 0.284)
* Q6K8X6 (score: 0.277)
* Q67W50 (score: 0.231)
* Q948L2 (score: 0.203)
* Q7Y0W5 (score: 0.111)
* Q7Y0W3 (score: 0.111)
* Q7Y0W2 (score: 0.111)
* Q7Y0W4 (score: 0.108)
* Q6AU68 (score: 0.069)
* Q8H908 (score: 0.057)
|
From Inparanoid:20070104
|-
|
''Saccharomyces cerevisiae'' 
|
* YHR206W (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Schizosaccharomyces pombe'' 
|
* SPAC8C94 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
 
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===Do-It-Yourself Web Tools===
<protect><!--Families_notes--></protect>
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
 
<protect><!--Homology_notes--></protect>
===Notes===
===Notes===


==Families==
==Families==
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{|  id="N4c604e958356e"  class=" tableEdit Evolution_families_table" 
|- {{table heading style}}
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!Organism!!Homologs (Statistics)!!Comments
!|Database!!Accession!!Notes
|-
|-  
|
|
''Shigella flexneri'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
YGIX
[http://pfam.janelia.org/family/PF00486 PF00486  Transcriptional regulatory protein, C terminal]
|
|
From SHIGELLACYC
|-
|-  
|
|
''E. coli'' O157
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
YGIX
[http://pfam.janelia.org/family/PF00072 PF00072  Response regulator receiver domain]
|
|
From ECOO157CYC
|-class='sortbottom'
 
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<protect><!--Families_notes--></protect>
===Notes===
===Notes===




==Links==
==Links==
{{Evolution_links_default}}
{{BacktoTop}}
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==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 00:44, 16 August 2011

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Shigella flexneri

YGIX

From SHIGELLACYC

E. coli O157

YGIX

From ECOO157CYC

Arabidopsis thaliana

  • AT4G31920 (score: 1.000; bootstrap: 100%)
  • AT2G01760 (score: 1.000; bootstrap: 100%)
  • AT2G25180 (score: 0.521)
  • AT3G16857 (score: 0.312)
  • AT4G16110 (score: 0.186)
  • AT5G49240 (score: 0.157)
  • AT1G49190 (score: 0.149)
  • AT3G62670 (score: 0.115)
  • AT4G18020 (score: 0.115)
  • AT5G07210 (score: 0.102)
  • AT2G27070 (score: 0.098)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0183884 (score: 1.000; bootstrap: 71%)
  • DDB0191388 (score: 1.000; bootstrap: 62%)
  • DDB0220512 (score: 0.106)
  • DDB0231984 (score: 0.080)
  • DDB0185194 (score: 0.077)
  • DDB0187191 (score: 0.076)
  • DDB0191306 (score: 0.075)
  • DDB0204819 (score: 0.075)
  • DDB0218392 (score: 0.066)
  • DDB0218263 (score: 0.065)
  • DDB0187593 (score: 0.065)
  • DDB0185325 (score: 0.061)
  • DDB0217795 (score: 0.060)
  • DDB0220485 (score: 0.058)
  • DDB0191407 (score: 0.058)
  • DDB0188118 (score: 0.058)
  • DDB0216671 (score: 0.056)
  • DDB0206390 (score: 0.052)

From Inparanoid:20070104

Oryza gramene

  • Q6H805 (score: 1.000; bootstrap: 63%)
  • Q94LW1 (score: 0.703)
  • Q5SML5 (score: 0.284)
  • Q6K8X6 (score: 0.277)
  • Q67W50 (score: 0.231)
  • Q948L2 (score: 0.203)
  • Q7Y0W5 (score: 0.111)
  • Q7Y0W3 (score: 0.111)
  • Q7Y0W2 (score: 0.111)
  • Q7Y0W4 (score: 0.108)
  • Q6AU68 (score: 0.069)
  • Q8H908 (score: 0.057)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YHR206W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC8C94 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

edit table


Notes

Families

[back to top]


See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00486 Transcriptional regulatory protein, C terminal

Pfam (EcoliWiki Page)

PF00072 Response regulator receiver domain


edit table


Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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