casA:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
imported>Wikientrybot
No edit summary
touch
 
(18 intermediate revisions by 4 users not shown)
Line 10: Line 10:
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}   
<noinclude>{{TabsTop}}   
{{Tab On|Quickview|ygcL}}{{Tab|Gene|ygcL}}{{Tab|Gene Product(s)|ygcL}}{{Tab|Expression|ygcL}}{{Tab|Evolution|ygcL}}{{Tab|On One Page|ygcL}}{{TabsBottom}}
{{Tab On|Quickview|casA}}{{Tab|Gene|casA}}{{Tab|Gene Product(s)|casA}}{{Tab|Expression|casA}}{{Tab|Evolution|casA}}{{Tab|On One Page|casA}}{{TabsBottom}}
{|
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
Line 23: Line 23:
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  
*  
****************************************************************************************** -->{{Quickview_table_help}}
****************************************************************************************** -->
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{|   id="R49b030631f67d" class=" tableEdit New_Quickview_Table"


|-
|-
!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
||
''casA''
|-
|-
!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
''ECK2755, b2760, JW2730'', ygcL<ref name='LIB:Riley_2006'/>, cse1, JW2730, ygcL''
|-
|-
!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
||
predicted protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
Function unknown; baeSR regulon; homologous to human TRRAP protein, phosphatidylinositol kinases and DNA-dependent protein kinases<ref name='LIB:EcoGene'/>
|-
|-
!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
''predicted protein<ref name='LIB:Riley_2006'/>, B2760<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgcL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , cse1, ECK2755, JW2730, ygcL, b2760''
|-
!align=left {{table_heading_style}} |Function from GO
||
<GO_nr />
|-
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
|-
|-
!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
||
transcription unit(s): [[:Category:Txn_unit:ygbF|ygbF]]<ref name='LIB:EcoCyc10.6'/>
|-
|-
!align=left {{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
||
In E. coli K12 transcription of casA is cryptic through silencing by H-NS <ref name='PMID:20132443'/>.
|-
!align=left {{table_heading_style}} |Quick Links
||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ygcL&s=search]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ygcL&loc=MG1655%3A2882160..2880652,W3110%3A2882794..2881286,DH10B%3A2974702..2973194,BW2952%3A2766464..2767972]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2766464&end=2767972&gene=ygcL&aa=mnllidnwipvrprnggkvqiinlqslycsrdqwrlslprddmelaalallvcigqiiapakddvefrhrimnpltedefqqliapwidmfylnhaehpfmqtkgvkandvtpmekllagvsgatncafvnqpgqgealcggctaialfnqanqapgfgggfksglrggtpvttfvrgidlrstvllnvltlprlqkqfpneshtenqptwikpiksnesipassigfvrglfwqpahielcdpigigkcsccgqesnlrytgflkekftftvnglwphphspclvtvkkgeveekflafttsapswtqisrvvvdkiiqnengnrvaavvnqfrniapqsplelimggyrnnqasilerrhdvlmfnqgwqqygnvineivtvglgyktalrkalytfaegfknkdfkgagvsvhetaerhfyrqsellipdvlanvnfsqadeviadlrdklhqlcemlfnqsvapyahhpklistlalaratlykhlrelkpqggpsng]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ygcL+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ygcL]]&nbsp;&nbsp;


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.7272.R49b030631f67d&page=7272&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.7272.R49b030631f67d&page=7272&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> ||
|}
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.7272.R49b030631f67d--></protect>
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.7272.R49b030631f67d--></protect>
Line 48: Line 72:
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}casA, as the other Cascade genes, is transcribed from a single promoter, which is silenced by H-NS <ref name='PMID:20132443'/>.




Line 55: Line 79:


<noinclude>
<noinclude>
==References==
==References==
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 21:41, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

casA

Gene Synonym(s)

ECK2755, b2760, JW2730, ygcL[1], cse1, JW2730, ygcL

Product Desc.

predicted protein[2][3]

Function unknown; baeSR regulon; homologous to human TRRAP protein, phosphatidylinositol kinases and DNA-dependent protein kinases[4]

Product Synonyms(s)

predicted protein[1], B2760[2][1], YgcL[2][1] , cse1, ECK2755, JW2730, ygcL, b2760

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ygbF[2]

Regulation/Activity

In E. coli K12 transcription of casA is cryptic through silencing by H-NS [5].

Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


casA, as the other Cascade genes, is transcribed from a single promoter, which is silenced by H-NS [5].




References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  5. ↑ 5.0 5.1 Pul, U et al. (2010) Identification and characterization of E. coli CRISPR-cas promoters and their silencing by H-NS. Mol. Microbiol. 75 1495-512 PubMed
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=casA:Quickview&oldid=1394675"