yebF:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''yebF''  
''yebF''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1848, b1847, JW1836''<ref name='LIB:Riley_2006'/>
''ECK1848, b1847, JW1836''<ref name='LIB:Riley_2006'/>, JW1836''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted protein<ref name='LIB:Riley_2006'/>, B1847<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YebF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted protein<ref name='LIB:Riley_2006'/>, B1847<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YebF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1848, JW1836, b1847''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yebF&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11807]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001741&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yebF&loc=MG1655%3A1928426..1928058,W3110%3A1932116..1931748,DH10B%3A2018997..2018629,REL606%3A1908978..1908610,BW2952%3A1820117..1820473]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1820117&end=1820473&gene=yebF&aa=meknmkkrgaflglllvsacasvfaannetsksvtfpkcedldaagiaasvkrdyqqnrvarwaddqkivgqadpvawvslqdiqgkddkwsvpltvrgksadihyqvsvdckagmaeyqrr]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yebF+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yebF]]&nbsp;&nbsp;


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Latest revision as of 21:42, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yebF

Gene Synonym(s)

ECK1848, b1847, JW1836[1], JW1836

Product Desc.

predicted protein[2][3]

Exported protein, function unknown[4]

Product Synonyms(s)

predicted protein[1], B1847[2][1], YebF[2][1] , ECK1848, JW1836, b1847

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yebF[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


YebF is secreted into the periplasm normally, then exported into the medium by an unknown mechanism. C-terminal fusions are also exported. The lipoprotein prediction is a proven false positive; the Cys is not conserved. First 21 aa are a cleaved signal peptide. First ATG has no RBS and is not conserved in Salmonella; second ATG has good RBS and was used to translate cloned yebF.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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