ydgK:Quickview: Difference between revisions
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{| | {| id="Y49b02d18ab94c" class=" tableEdit New_Quickview_Table" | ||
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!align=left {{table_heading_style}} |Standard Name | !align=left {{table_heading_style}} |Standard Name | ||
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''ydgK'' | ''ydgK'' | ||
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!align=left {{table_heading_style}} |Gene Synonym(s) | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK1622, b1626, JW1618, rsxP''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ''ECK1622, b1626, JW1618, rsxP''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, rsxP'' | ||
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!align=left {{table_heading_style}} |Product Desc. | !align=left {{table_heading_style}} |Product Desc. | ||
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!align=left {{table_heading_style}} |Product Synonyms(s) | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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conserved inner membrane protein<ref name='LIB:Riley_2006'/>, RsxP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdgK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1626<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''conserved inner membrane protein<ref name='LIB:Riley_2006'/>, RsxP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdgK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1626<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1622, JW1618, rsxP, b1626'' | ||
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!align=left {{table_heading_style}} |Function from GO | |||
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<GO_nr /> | |||
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!align=left {{table_heading_style}} |Knock-Out Phenotype | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ydgK&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6870]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003459&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ydgK&loc=MG1655%3A1703274..1703714,W3110%3A1706964..1707404,DH10B%3A1793845..1794285,REL606%3A1682444..1682884,BW2952%3A1595333..1595773]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1595333&end=1595773&gene=ydgK&aa=mrrysgepmttttpqriggwllgplawllvallsttlalllytaalsspqtfqtlggqalttqilwgvsfitaialwyytlwltiaffkrrrcvpkhyiiwllisvllavkafafspvedgiavrqllftllatalivpyfkrssrvkatfvnp]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydgK+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ydgK]] | |||
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Latest revision as of 21:55, 27 May 2013
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
ydgK |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
conserved inner membrane protein[2][3] Membrane protein, function unknown[4] |
| Product Synonyms(s) |
conserved inner membrane protein[1], RsxP[2][1], YdgK[2][1], B1626[2][1] , ECK1622, JW1618, rsxP, b1626 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression |
transcription unit(s): ydgK-rsxABCDGE-nth[2] |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
ydgK transcripts readthrough into the rsxABCDGEnth operon (Gifford, 2000). The rsxA promoter is >5X the ydgK promoter (Koo, 2003). ydgK is not involved in the reduction of SoxR, but was called rsxP because its promoter contributes to rsx operon expression (Koo, 2003).[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.