ydgK:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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|-
|-
!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
||
''ydgK''
|-
|-
!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
''ECK1622, b1626, JW1618, rsxP''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, rsxP''
|-
|-
!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
||
conserved inner membrane protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
Membrane protein, function unknown<ref name='LIB:EcoGene'/>
|-
|-
!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
''conserved inner membrane protein<ref name='LIB:Riley_2006'/>, RsxP<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdgK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1626<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1622, JW1618, rsxP, b1626''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
|-
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
|-
|-
!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
||
transcription unit(s): [[:Category:Txn_unit:ydgK-rsxABCDGE-nth|ydgK-rsxABCDGE-nth]]<ref name='LIB:EcoCyc10.6'/>
|-
|-
!align=left {{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
||
|-
!align=left {{table_heading_style}} |Quick Links
||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ydgK&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6870]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003459&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ydgK&loc=MG1655%3A1703274..1703714,W3110%3A1706964..1707404,DH10B%3A1793845..1794285,REL606%3A1682444..1682884,BW2952%3A1595333..1595773]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1595333&end=1595773&gene=ydgK&aa=mrrysgepmttttpqriggwllgplawllvallsttlalllytaalsspqtfqtlggqalttqilwgvsfitaialwyytlwltiaffkrrrcvpkhyiiwllisvllavkafafspvedgiavrqllftllatalivpyfkrssrvkatfvnp]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydgK+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ydgK]]&nbsp;&nbsp;


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Latest revision as of 21:55, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ydgK

Gene Synonym(s)

ECK1622, b1626, JW1618, rsxP[1][2], rsxP

Product Desc.

conserved inner membrane protein[2][3]

Membrane protein, function unknown[4]

Product Synonyms(s)

conserved inner membrane protein[1], RsxP[2][1], YdgK[2][1], B1626[2][1] , ECK1622, JW1618, rsxP, b1626

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ydgK-rsxABCDGE-nth[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


ydgK transcripts readthrough into the rsxABCDGEnth operon (Gifford, 2000). The rsxA promoter is >5X the ydgK promoter (Koo, 2003). ydgK is not involved in the reduction of SoxR, but was called rsxP because its promoter contributes to rsx operon expression (Koo, 2003).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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