ycdT:Quickview: Difference between revisions

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Latest revision as of 21:43, 27 May 2013

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Quickview

Standard Name	ycdT
Gene Synonym(s)	ECK1015, b1025, JW5143^[1], JW5143
Product Desc.	predicted diguanylate cyclase^[2]^[3] Probable diguanylate cyclase, function unknown^[4]
Product Synonyms(s)	predicted diguanylate cyclase^[1], B1025^[2]^[1], YcdT^[2]^[1] , ECK1015, JW5143, b1025
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): ycdT^[2]
Regulation/Activity
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Notes

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YcdT is homolgous to Y. pestis hemin storage gene hmsT, but is unable to complement hmsT mutations. Shown not to be a regulator of the divergent pgaABCD operon. Codon usage indicates ycdT is an alien (horizontal) gene. YcdT has a C-terminal putative diguanylate cyclase GGDEF domain.^[4]

References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoGene-4] 4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

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@@ Line 23: / Line 23: @@
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->{{Quickview_table_help}}
+****************************************************************************************** -->
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+{|   id="F49b02b6cb52f9"  class=" tableEdit New_Quickview_Table"
 |-
 !align=left {{table_heading_style}} |Standard Name
+||
+''ycdT''
 |-
 !align=left {{table_heading_style}} |Gene Synonym(s)
+||
+''ECK1015, b1025, JW5143''<ref name='LIB:Riley_2006'/>, JW5143''
 |-
 !align=left {{table_heading_style}} |Product Desc.
+||
+predicted diguanylate cyclase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+Probable diguanylate cyclase, function unknown<ref name='LIB:EcoGene'/>
 |-
 !align=left {{table_heading_style}} |Product Synonyms(s)
+||
+''predicted diguanylate cyclase<ref name='LIB:Riley_2006'/>, B1025<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1015, JW5143, b1025''
+|-
+!align=left {{table_heading_style}} |Function from GO
+||
+<GO_nr />
 |-
 !align=left {{table_heading_style}} |Knock-Out Phenotype
+||
 |-
 !align=left {{table_heading_style}} |Regulation/Expression
+||
+transcription unit(s): [[:Category:Txn_unit:ycdT|ycdT]]<ref name='LIB:EcoCyc10.6'/>
 |-
 !align=left {{table_heading_style}} |Regulation/Activity
+||
+|-
+!align=left {{table_heading_style}} |Quick Links
+||
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ycdT&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6532]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003130&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ycdT&loc=MG1655%3A1092099..1093457,W3110%3A1093298..1094656,DH10B%3A1146027..1148721,REL606%3A1109161..1110519,BW2952%3A995843..997201]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=995843&end=997201&gene=ycdT&aa=mekdylrisstvlvsllfglalvlvnswfnqpgveevvprstylmvmialffidtvafifmqlyfiydrrqfsncvlslaflscliyfvitviiiqqiieerltssvvqndiaiyylfrqmslciliflalvnkvsentkqrnlfskkmtlcislffvfggpivahilsshyesynlhiaeltnengqvvwkasyvtimifmwltllsvnlyfnglrydiwngvtviafcavlynisllfmsrysvstwyisrtievvskltvmvifmchifsalrvtkniahrdpltnifnrnyffneltvqsasaqktpycvmimdidhfkkvndtwghpvgdqviktvvniigksirpddllarvggeefgvlltdidterakalaerirenverltgdnpeyaipqkvtisigavvtqenalnpneiyrladnalyeaketgrnkvvvrdvvnfcesp]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ycdT+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ycdT]]&nbsp;&nbsp;
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ycdT:Quickview: Difference between revisions

Latest revision as of 21:43, 27 May 2013

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