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{| | {| id="Z49b02613b9a0f" class=" tableEdit New_Quickview_Table" | ||
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!align=left {{table_heading_style}} |Standard Name | !align=left {{table_heading_style}} |Standard Name | ||
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''tadA'' | |||
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!align=left {{table_heading_style}} |Gene Synonym(s) | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK2557, b2559, JW2543, yfhC''<ref name='LIB:Riley_2006'/>, yfhC'' | |||
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!align=left {{table_heading_style}} |Product Desc. | !align=left {{table_heading_style}} |Product Desc. | ||
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TadA; of tRNA specific adenosine deaminase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; | |||
Component of [[:Category:Complex:tRNA-specific adenosine deaminase|tRNA-specific adenosine deaminase]]<ref name='LIB:EcoCyc11.1'/> | |||
A34-tRNA adenosine deaminase; point mutation confers resistance to HokC(Gef)-mediated cell killing; essential gene; homodimeric<ref name='LIB:EcoGene'/> | |||
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!align=left {{table_heading_style}} |Product Synonyms(s) | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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''tRNA-specific adenosine deaminase<ref name='LIB:Riley_2006'/>, TadA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfhC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2559<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2557, JW2543, yfhC, b2559'' | |||
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!align=left {{table_heading_style}} |Function from GO | |||
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<GO_nr /> | |||
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!align=left {{table_heading_style}} |Knock-Out Phenotype | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Regulation/Expression | !align=left {{table_heading_style}} |Regulation/Expression | ||
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transcription unit(s): [[:Category:Txn_unit:tadA|tadA]]<ref name='LIB:EcoCyc10.6'/> | |||
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!align=left {{table_heading_style}} |Regulation/Activity | !align=left {{table_heading_style}} |Regulation/Activity | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=tadA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11372]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001340&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=tadA&loc=MG1655%3A2695912..2695376,W3110%3A2696546..2696010,DH10B%3A2787644..2787141,REL606%3A2619382..2618846,BW2952%3A2581181..2581684]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2581181&end=2581684&gene=tadA&aa=mrrafitgvfflsevefsheywmrhaltlakrawderevpvgavlvhnnrvigegwnrpigrhdptahaeimalrqgglvmqnyrlidatlyvtlepcvmcagamihsrigrvvfgardaktgaagslmdvlhhpgmnhrveitegiladecaallsdffrmrrqeikaqkkaqsstd]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=tadA+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=tadA]] | |||
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Latest revision as of 21:45, 27 May 2013
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
tadA |
|---|---|
| Gene Synonym(s) |
ECK2557, b2559, JW2543, yfhC[1], yfhC |
| Product Desc. |
TadA; of tRNA specific adenosine deaminase[2][3]; Component of tRNA-specific adenosine deaminase[3] A34-tRNA adenosine deaminase; point mutation confers resistance to HokC(Gef)-mediated cell killing; essential gene; homodimeric[4] |
| Product Synonyms(s) |
tRNA-specific adenosine deaminase[1], TadA[2][1], YfhC[2][1], B2559[2][1] , ECK2557, JW2543, yfhC, b2559 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
Previously reported non-essential nature was mistakenly based on an insertion that removed the last 17 aa, but the truncated enzyme is active. Three possible start sites annotated in various orthologs: -11, +1, and +12; alignment results ambiguous; +1 chosen due to best RBS.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.