rutC:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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|-
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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''rutC''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ycdK, ECK1001, b1010, JW0995''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, JW0995''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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predicted endoribonuclease<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
Gene in rut operon for pyrimidine nitrogen catabolism, function unknown<ref name='LIB:EcoGene'/>
|-
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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''conserved protein<ref name='LIB:Riley_2006'/>, B1010<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RutC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1001, JW0995, ycdK, b1010''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rutABCDEFG|rutABCDEFG]]<ref name='LIB:EcoCyc10.6'/>
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!align=left {{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rutC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6521]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003121&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rutC&loc=MG1655%3A1071382..1070996,W3110%3A1072581..1072195,DH10B%3A1125310..1124924,BW2952%3A973964..974350]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=973964&end=974350&gene=rutC&aa=mpksviipagssaplapfvpgtladgvvyvsgtlafdqhnnvlfaddpkaqtrhvletirkvietaggtmadvtfnsifitdwknyaaineiyaeffpgdkparfciqcglvkpdalveiatiahiak]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rutC+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rutC]]&nbsp;&nbsp;


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Latest revision as of 21:46, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rutC

Gene Synonym(s)

ycdK, ECK1001, b1010, JW0995[1][2], JW0995

Product Desc.

predicted endoribonuclease[2][3]

Gene in rut operon for pyrimidine nitrogen catabolism, function unknown[4]

Product Synonyms(s)

conserved protein[1], B1010[2][1], YcdK[2][1], RutC[2][1] , ECK1001, JW0995, ycdK, b1010

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rutABCDEFG[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


NtrC regulon. The rut operon is required for the utilization of thymidine, uridine and cytidine as nitrogen sources at 37C, but not at room temperature. YjgF, RutC, TdcF, YoaB and YjgH are paralogs and members of a highly conserved YjgF family (pfam:PF01042) with diverse mutant phenotypes and unknown molecular function; the family members form homotrimers, some binding 2-ketoglutarate or related compounds. The rat homolog PSP (perchloric acid-soluble protein) has been reported to have endoribonuclease activity, Endoribonuclease L, against ss mRNA, inhibiting translation, but this activity has not been demonstrated for other members.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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