phnF:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''phnF''  
''phnF''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK4095, b4102, JW4063''<ref name='LIB:Riley_2006'/>
''ECK4095, b4102, JW4063''<ref name='LIB:Riley_2006'/>, JW4063''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation product<ref name='LIB:Riley_2006'/>, B4102 product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PhnF product<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation<ref name='LIB:Riley_2006'/>, B4102<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PhnF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4095, JW4063, b4102''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=phnF&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10715]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000707&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=phnF&loc=MG1655%3A4320445..4319720,W3110%3A4327100..4326375,REL606%3A4301244..4300519,DH10B%3A4420807..4420082,BW2952%3A4258455..4259180]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4258455&end=4259180&gene=phnF&aa=mhlsthptsyptryqeiaakleqelrqhyrcgdylpaeqqlaarfevnrhtlrraidqlvekgwvqrrqgvgvlvlmrpfdyplnaqarfsqnlldqgshptsekllsvlrpasghvadalgitegenvihlrtlrrvngvalclidhyfadltlwptlqrfdsgslhdflreqtgialrrsqtrisarraqakecqrleipnmspllcvrtlnhrdgesspaeysvsltradmieftmeh]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=phnF+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=phnF]]&nbsp;&nbsp;


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Latest revision as of 21:54, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

phnF

Gene Synonym(s)

ECK4095, b4102, JW4063[1], JW4063

Product Desc.

PhnF transcriptional regulator[2][3]

Phosphonate utilization, probable regulatory gene[4]

Product Synonyms(s)

predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation[1], B4102[2][1], PhnF[2][1] , ECK4095, JW4063, b4102

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): phnCDEEFGHIJKLMNOP[2], OP00283, phnCDE-w4011-phnFGHIJKLMNOP, phnCDE-w4011-phnFGHIJKLMNOPQ, phnCDE-b4103-phnFGHIJKLMNOP

Regulation/Activity
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Notes

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GntR family. Pho regulon. Phosphonate utilization is cryptic in K-12.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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