pgaB:Quickview: Difference between revisions
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{| | {| id="R49aeef710bcc4" class=" tableEdit New_Quickview_Table" | ||
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!align=left {{table_heading_style}} |Standard Name | !align=left {{table_heading_style}} |Standard Name | ||
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''pgaB'' | ''pgaB'' | ||
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!align=left {{table_heading_style}} |Gene Synonym(s) | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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!align=left {{table_heading_style}} |Product Synonyms(s) | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted enzyme associated with biofilm formation<ref name='LIB:Riley_2006'/>, B1023<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HmsF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PgaB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''predicted enzyme associated with biofilm formation<ref name='LIB:Riley_2006'/>, B1023<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HmsF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PgaB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1013, JW5142, ycdR, b1023'' | ||
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!align=left {{table_heading_style}} |Function from GO | |||
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<GO_nr /> | |||
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!align=left {{table_heading_style}} |Knock-Out Phenotype | !align=left {{table_heading_style}} |Knock-Out Phenotype | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=pgaB&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6530]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003128&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=pgaB&loc=MG1655%3A1089080..1087062,W3110%3A1090279..1088261,DH10B%3A1143008..1140990,REL606%3A1104124..1106142,BW2952%3A990030..992048]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=990030&end=992048&gene=pgaB&aa=mlrngnkyllmlvsiimltacisqsrtsfippqdresllaeqpwphngfvaiswhnvedeaadqrfmsvrtsalreqfawlrengyqpvsiaqireahrggkplpekavvltfddgyqsfytrvfpilqafqwpavwapvgswvdtpadkqvkfgdelvdreyfatwqqvrevarsrlvelashtwnshygiqanatgsllpvyvnrayftdharyetaaeyrerirldavkmteylrtkvevnphvfvwpygeangiaieelkklgydmfftlesglanasqldsiprvliannpslkefaqqiitvqekspqrimhidldyvydenlqqmdrnidvliqrvkdmqistvylqafadpdgdglvkevwfpnrllpmkadifsrvawqlrtrsgvniyawmpvlswdldptltrvkylptgekkaqihpeqyhrlspfddrvraqvgmlyedlaghaafdgilfhddallsdyedasapaitayqqagfsgslseirqnpeqfkqwarfksraltdftlelsarvkairgphiktarnifalpviqpeseawfaqnyadflksydwtaimampylegvaeksadqwliqltnqiknipqakdksilelqaqnwqkngqhqaissqqlahwmsllqlngvknygyypdnflhnqpeidlirpefstawypknd]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=pgaB+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=pgaB]] | |||
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Latest revision as of 21:47, 27 May 2013
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
pgaB |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
predicted enzyme associated with biofilm formation[2][3] Biofilm adhesin polysaccharide PGA export; lipoprotein; polysaccharide deacetylase activity needed for export[4] |
| Product Synonyms(s) |
predicted enzyme associated with biofilm formation[1], B1023[2][1], YcdR[2][1], HmsF[2][1], PgaB[2][1] , ECK1013, JW5142, ycdR, b1023 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
PGA is a biofilm adhesin polysaccharide. PgaB is homologous to Y. pestis hemin storage protein HmsF, but is unable to complement hmsF mutations. First 20 aa are a type II signal peptide. Codon usage indicates pgaB is an alien (horizontal) gene. CsrA regulon. yadE paralog. PGA is oly-beta-1,6-N-acetyl-D-glucosamine.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.