rbn:Quickview: Difference between revisions

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{|   id="X49b021b4777e1" class=" tableEdit New_Quickview_Table"


|-
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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[rbn:Gene|''rbn]]'' (synonyms: ''elaC, ECK2262, b2268, JW2263, ecoZ, rnz, zipD'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''rbn''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[rbn:Gene_Product(s)|ElaC product]]<ref name='LIB:Riley_2006'/>: binuclear zinc phosphodiesterase product, ZipD product, Rnz product, B2268 product, EcoZ product
''elaC, ECK2262, b2268, JW2263, ecoZ, rnz, zipD''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>, zipD''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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ElaC<ref name='LIB:EcoCyc10.6'/> Rbn<ref name='LIB:EcoCyc11.1'/>  
ElaC<ref name='LIB:EcoCyc10.6'/>; Rbn<ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:RNase BN|RNase BN]]<ref name='LIB:EcoCyc11.1'/>
Component of [[:Category:Complex:RNase BN|RNase BN]]<ref name='LIB:EcoCyc11.1'/>


RNase BN, tRNA processing enzyme; has zinc phosphodiesterase activity<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''binuclear zinc phosphodiesterase<ref name='LIB:Riley_2006'/>, ZipD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Rnz<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2268<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EcoZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ElaC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2262, ecoZ, elaC, JW2263, rnz, zipD, b2268''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:elaC|elaC]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:elaC|elaC]]<ref name='LIB:EcoCyc10.6'/>  
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|-
!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rbn&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7175]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003751&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rbn&loc=MG1655%3A2379630..2380547,W3110%3A2386278..2387195,DH10B%3A4173866..4174738,BW2952%3A2265435..2266352]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2265435&end=2266352&gene=rbn&aa=mkrdelmeliflgtsagvptrtrnvtaillnlqhptqsglwlfdcgegtqhqllhtafnpgkldkifishlhgdhlfglpgllcsrsmsgiiqpltiygpqgirefvetalrisgswtdypleiveigageilddglrkvtayplehplecygyrieehdkpgalnaqalkaagvppgplfqelkagktitledgrqingadylaapvpgkalaifgdtgpcdaaldlakgvdvmvheatlditmeakansrghsstrqaatlareagvgkliithvssryddkgcqhllrecrsifpatelandftvfnv]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rbn+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rbn]]&nbsp;&nbsp;


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elaC is renamed rbn.  The elaABCD genes are named, without a phenotypic explanation, in Genbank U58768. yihY was previously thought to be rbn. rbn is an essential gene.  Schilling, et al. Biochem Biophys Res Commun. 2004 Aug 6;320(4):1365-73. has erratum in Biochem Biophys Res Commun. 2005 Feb 4;327(1):371.<ref name='LIB:EcoGene'/>
elaC is renamed rbn.  The elaABCD genes are named, without a phenotypic explanation, in Genbank U58768. yihY was previously thought to be rbn. rbn is an essential gene [not clear this is correct].  Schilling, et al. Biochem Biophys Res Commun. 2004 Aug 6;320(4):1365-73. has erratum in Biochem Biophys Res Commun. 2005 Feb 4;327(1):371.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:54, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rbn

Gene Synonym(s)

elaC, ECK2262, b2268, JW2263, ecoZ, rnz, zipD[1][2], zipD

Product Desc.

ElaC[3]; Rbn[2];

Component of RNase BN[2]

RNase BN, tRNA processing enzyme; has zinc phosphodiesterase activity[4]

Product Synonyms(s)

binuclear zinc phosphodiesterase[1], ZipD[3][1], Rnz[3][1], B2268[3][1], EcoZ[3][1], ElaC[3][1] , ECK2262, ecoZ, elaC, JW2263, rnz, zipD, b2268

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): elaC[3]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


elaC is renamed rbn. The elaABCD genes are named, without a phenotypic explanation, in Genbank U58768. yihY was previously thought to be rbn. rbn is an essential gene [not clear this is correct]. Schilling, et al. Biochem Biophys Res Commun. 2004 Aug 6;320(4):1365-73. has erratum in Biochem Biophys Res Commun. 2005 Feb 4;327(1):371.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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