ycdT:Quickview: Difference between revisions
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{| | {| id="F49b02b6cb52f9" class=" tableEdit New_Quickview_Table" | ||
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!align=left {{table_heading_style}} | | !align=left {{table_heading_style}} |Standard Name | ||
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''ycdT'' | |||
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!align=left {{table_heading_style}} | | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK1015, b1025, JW5143''<ref name='LIB:Riley_2006'/>, JW5143'' | |||
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!align=left {{table_heading_style}} | | !align=left {{table_heading_style}} |Product Desc. | ||
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predicted diguanylate cyclase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | predicted diguanylate cyclase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
Probable diguanylate cyclase, function unknown<ref name='LIB:EcoGene'/> | |||
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!align=left {{table_heading_style}} |Knock-Out Phenotype | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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''predicted diguanylate cyclase<ref name='LIB:Riley_2006'/>, B1025<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcdT<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1015, JW5143, b1025'' | |||
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!align=left {{table_heading_style}} |Function from GO | |||
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<GO_nr /> | |||
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!align=left {{table_heading_style}} |Knock-Out Phenotype | |||
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!align=left {{table_heading_style}} |Regulation/Expression | !align=left {{table_heading_style}} |Regulation/Expression | ||
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transcription unit(s): [[:Category:Txn_unit:ycdT|ycdT]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:ycdT|ycdT]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ycdT&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6532]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003130&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ycdT&loc=MG1655%3A1092099..1093457,W3110%3A1093298..1094656,DH10B%3A1146027..1148721,REL606%3A1109161..1110519,BW2952%3A995843..997201]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=995843&end=997201&gene=ycdT&aa=mekdylrisstvlvsllfglalvlvnswfnqpgveevvprstylmvmialffidtvafifmqlyfiydrrqfsncvlslaflscliyfvitviiiqqiieerltssvvqndiaiyylfrqmslciliflalvnkvsentkqrnlfskkmtlcislffvfggpivahilsshyesynlhiaeltnengqvvwkasyvtimifmwltllsvnlyfnglrydiwngvtviafcavlynisllfmsrysvstwyisrtievvskltvmvifmchifsalrvtkniahrdpltnifnrnyffneltvqsasaqktpycvmimdidhfkkvndtwghpvgdqviktvvniigksirpddllarvggeefgvlltdidterakalaerirenverltgdnpeyaipqkvtisigavvtqenalnpneiyrladnalyeaketgrnkvvvrdvvnfcesp]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ycdT+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ycdT]] | |||
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Latest revision as of 21:43, 27 May 2013
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
ycdT |
|---|---|
| Gene Synonym(s) |
ECK1015, b1025, JW5143[1], JW5143 |
| Product Desc. |
predicted diguanylate cyclase[2][3] Probable diguanylate cyclase, function unknown[4] |
| Product Synonyms(s) |
predicted diguanylate cyclase[1], B1025[2][1], YcdT[2][1] , ECK1015, JW5143, b1025 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
YcdT is homolgous to Y. pestis hemin storage gene hmsT, but is unable to complement hmsT mutations. Shown not to be a regulator of the divergent pgaABCD operon. Codon usage indicates ycdT is an alien (horizontal) gene. YcdT has a C-terminal putative diguanylate cyclase GGDEF domain.[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.