yafL:Quickview: Difference between revisions

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{|   id="O49b02919654b2" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[yafL:Gene|''yafL]]'' (synonyms: ''ECK0228, b0227, JW0217'')<ref name='LIB:Riley_2006'/>
''yafL''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[yafL:Gene_Product(s)|YafL product]]<ref name='LIB:Riley_2006'/>: predicted lipoprotein and C40 family peptidase product, B0227 product
''ECK0228, b0227, JW0217''<ref name='LIB:Riley_2006'/>, JW0217''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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predicted lipoprotein and C40 family peptidase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
predicted lipoprotein and C40 family peptidase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Putative peptidase, C40 clan, function unknown; probable lipoprotein, Cys conserved<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted lipoprotein and C40 family peptidase<ref name='LIB:Riley_2006'/>, YafL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B0227<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0228, JW0217, b0227''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yafL|yafL]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yafL|yafL]]<ref name='LIB:EcoCyc10.6'/>  
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|-
!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yafL&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6111]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002731&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yafL&loc=MG1655%3A246712..247461,W3110%3A246712..247461,DH10B%3A220816..221565,REL606%3A251283..252032,BW2952%3A246711..247460]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=246711&end=247460&gene=yafL&aa=mslpsipsfvlsgllliclpfssfasattshisfsyaarqrmqnrarllkqyqthlkkqasyivegnaeskralrqhnreqikqhpewfpaplkasdrrwqalaennhflssdhlhnitevaihrleqqlgkpyvwggtrpdkgfdcsglvfyaynkileaklprtanemyhyrrativanndlrrgdllffhihsreiadhmgvylgdgqfiesprtgetirisrlaepfwqdhflgarrilteetil]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yafL+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yafL]]&nbsp;&nbsp;


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Latest revision as of 21:44, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yafL

Gene Synonym(s)

ECK0228, b0227, JW0217[1], JW0217

Product Desc.

predicted lipoprotein and C40 family peptidase[2][3]

Putative peptidase, C40 clan, function unknown; probable lipoprotein, Cys conserved[4]

Product Synonyms(s)

predicted lipoprotein and C40 family peptidase[1], YafL[2][1], B0227[2][1] , ECK0228, JW0217, b0227

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yafL[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


First 17 aa are predicted to be a type II signal peptide. spr, nlpC, yafL and ydhO are paralogs.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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