hokA:Quickview: Difference between revisions
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imported>Wikientrybot Adding EcoGene Comments |
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{| | {| id="V49aee8ffd1a73" class=" tableEdit New_Quickview_Table" | ||
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!align=left {{table_heading_style}} | | !align=left {{table_heading_style}} |Standard Name | ||
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''hokA'' | |||
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!align=left {{table_heading_style}} | | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK3544, b4455, JW3526, yiaZ''<ref name='LIB:Riley_2006'/>, yiaZ'' | |||
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!align=left {{table_heading_style}} | | !align=left {{table_heading_style}} |Product Desc. | ||
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small toxic membrane polypeptide<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | small toxic membrane polypeptide<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
Small toxic membrane polypeptide; homologous to plasmid-encoded plasmid stabilization toxins regulated by antisense RNA; functional relevance of chromosomal homologs is unknown<ref name='LIB:EcoGene'/> | |||
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!align=left {{table_heading_style}} |Knock-Out Phenotype | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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''toxic polypeptide, small<ref name='LIB:Riley_2006'/>, HokA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YiaZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B4455<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3544, JW3526, yiaZ, b4455'' | |||
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!align=left {{table_heading_style}} |Function from GO | |||
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<GO_nr /> | |||
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!align=left {{table_heading_style}} |Knock-Out Phenotype | |||
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!align=left {{table_heading_style}} |Regulation/Expression | !align=left {{table_heading_style}} |Regulation/Expression | ||
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transcription unit(s): [[:Category:Txn_unit:hokA|hokA]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:hokA|hokA]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=hokA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G0-9613]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002664&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=hokA&loc=MG1655%3A3718623..3718471,W3110%3A3919815..3919967,DH10B%3A3816200..3816048,REL606%3A3651058..3650906,BW2952%3A3606797..3606949]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3606797&end=3606949&gene=hokA&aa=mpqkyrllslivicftllfftwmirdslcelhikqesyelaaflacklke]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hokA+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hokA]] | |||
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<protect><!--Quickview_notes--></protect> | <protect><!--Quickview_notes--></protect> | ||
Latest revision as of 21:49, 27 May 2013
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
hokA |
|---|---|
| Gene Synonym(s) |
ECK3544, b4455, JW3526, yiaZ[1], yiaZ |
| Product Desc. |
small toxic membrane polypeptide[2][3] Small toxic membrane polypeptide; homologous to plasmid-encoded plasmid stabilization toxins regulated by antisense RNA; functional relevance of chromosomal homologs is unknown[4] |
| Product Synonyms(s) |
toxic polypeptide, small[1], HokA[2][1], YiaZ[2][1], B4455[2][1] , ECK3544, JW3526, yiaZ, b4455 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
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| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
The hokA transcript is interrupted by IS150, interrupting and deleting part of the mokA and sokA regulatory genes.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.