ygbJ:Evolution: Difference between revisions

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{{Tab|Quickview|ygbJ}}{{Tab|Gene|ygbJ}}{{Tab|Gene Product(s)|ygbJ}}{{Tab|Expression|ygbJ}}{{Tab On|Evolution|ygbJ}}{{Tab|On One Page|ygbJ}}{{TabsBottom}}
{{Tab|Quickview|ygbJ}}{{Tab|Gene|ygbJ}}{{Tab|Gene Product(s)|ygbJ}}{{Tab|Expression|ygbJ}}{{Tab On|Evolution|ygbJ}}{{Tab|On One Page|ygbJ}}{{TabsBottom}}
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==Homologs in Other Organisms==
==Homologs in Other Organisms==
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{|  id="D46abe67755100"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417216&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417216&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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==Families==
==Families==
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!Database!!Accession!!Notes
!Database!!Accession!!Notes
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<protect><!--Families_notes--></protect>
===Notes===
 
==Families==
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03446 PF03446  NAD binding domain of 6-phosphogluconate dehydrogenase]
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===Notes===
===Notes===




==Links==
==Links==
{{Evolution_links_default}}
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Apis mellifera ]][[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Xenopus tropicalis ]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Apis mellifera ]]
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]

Latest revision as of 20:47, 16 August 2011

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000005689 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G18270 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00028013 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00007122 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0034390 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000030452 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Oryza gramene

  • Q652S1 (score: 1.000; bootstrap: 99%)
  • Q652S0 (score: 0.168)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000013200 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000044924 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

edit table


Do-It-Yourself Web Tools


Notes

Families

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Database Accession Notes

PFAM (EcoliWiki Page)

PFAM:PF00455

edit table


Notes

Families

[back to top]


See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes

Pfam (EcoliWiki Page)

PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase


edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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