mrr:Quickview: Difference between revisions
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imported>Wikientrybot Adding EcoGene Comments |
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{| | {| id="I49aeed42df7f6" class=" tableEdit New_Quickview_Table" | ||
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!align=left {{table_heading_style}} | | !align=left {{table_heading_style}} |Standard Name | ||
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''mrr'' | |||
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!align=left {{table_heading_style}} | | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK4341, b4351, JW4314, mcrF''<ref name='LIB:Riley_2006'/>, mcrF'' | |||
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!align=left {{table_heading_style}} | | !align=left {{table_heading_style}} |Product Desc. | ||
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restriction of methylated adenine<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | restriction of methylated adenine<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
Restriction of DNA with certain methylated adenine or cytosine residues<ref name='LIB:EcoGene'/> | |||
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!align=left {{table_heading_style}} |Knock-Out Phenotype | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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''methylated adenine and cytosine restriction protein <ref name='LIB:Riley_2006'/>, B4351 <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Mrr <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4341, JW4314, mcrF, b4351'' | |||
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!align=left {{table_heading_style}} |Function from GO | |||
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<GO_nr /> | |||
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!align=left {{table_heading_style}} |Knock-Out Phenotype | |||
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!align=left {{table_heading_style}} |Regulation/Expression | !align=left {{table_heading_style}} |Regulation/Expression | ||
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transcription unit(s): [[:Category:Txn_unit:mrr|mrr]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:mrr|mrr]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=mrr&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10612]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000605&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=mrr&loc=MG1655%3A4584972..4585886,W3110%3A4591629..4592543,REL606%3A4564924..4565838,BW2952%3A4523456..4524370]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4523456&end=4524370&gene=mrr&aa=mtvptydkfiepvlrylatkpegaaardvheaaadalglddsqrakvitsgqlvyknragwahdrlkraglsqslsrgkwcltpagfdwvashpqpmteqetnhlafafvnvklksrpdavdldpkadspdheelaksspddrldqalkelrdavadevlenllqvspsrfevivldvlhrlgygghrddlqrvggtgdggidgvisldklglekvyvqakrwqntvgrpelqafygalagqkakrgvfittsgftsqardfaqsvegmvlvdgerlvhlmienevgvssrllkvpkldmdyfe]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=mrr+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=mrr]] | |||
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Latest revision as of 21:47, 27 May 2013
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
mrr |
|---|---|
| Gene Synonym(s) |
ECK4341, b4351, JW4314, mcrF[1], mcrF |
| Product Desc. |
restriction of methylated adenine[2][3] Restriction of DNA with certain methylated adenine or cytosine residues[4] |
| Product Synonyms(s) |
methylated adenine and cytosine restriction protein [1], B4351 [2][1], Mrr [2][1] , ECK4341, JW4314, mcrF, b4351 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
The N-terminus of overexpressed Mrr was determined, but the native RBS was not used. The initial Met was not clipped. although unVerified, this start is almost certainly correct. Mrr is normally cryptic, but is activated by high pressure stress, which leads to a recB-dependent SOS pathway activation.[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.