exbD:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[exbD:Gene|''exbD]]'' (synonyms: ''ECK2998, b3005, JW2973'')<ref name='LIB:Riley_2006'/>
''exbD''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[exbD:Gene_Product(s)|ExbD product]]<ref name='LIB:Riley_2006'/>: membrane spanning protein in TonB-ExbB-ExbD complex product, B3005 product
''ECK2998, b3005, JW2973''<ref name='LIB:Riley_2006'/>, JW2973''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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ExbD uptake of enterochelin; tonB-dependent uptake of B colicins<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
ExbD uptake of enterochelin; tonB-dependent uptake of B colicins<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:TonB energy transducing system|TonB energy transducing system]]<ref name='LIB:EcoCyc11.1'/>,[[:Category:Complex:Outer Membrane Ferric Citrate Transport System|Outer Membrane Ferric Citrate Transport System]]<ref name='LIB:EcoCyc11.1'/>,[[:Category:Complex:Outer Membrane Ferrichrome Transport System|Outer Membrane Ferrichrome Transport System]]<ref name='LIB:EcoCyc11.1'/>,[[:Category:Complex:Outer Membrane Ferric Enterobactin Transport System|Outer Membrane Ferric Enterobactin Transport System]]<ref name='LIB:EcoCyc11.1'/>,[[:Category:Complex:vitamin B12 outer membrane transport complex|vitamin B12 outer membrane transport complex]]<ref name='LIB:EcoCyc11.1'/>,[[:Category:Complex:ferric dicitrate uptake system|ferric dicitrate uptake system]]<ref name='LIB:EcoCyc11.1'/>,[[:Category:Complex:ferrichrome uptake system|ferrichrome uptake system]]<ref name='LIB:EcoCyc11.1'/>,[[:Category:Complex:Ferric Enterobactin Transport System|Ferric Enterobactin Transport System]]<ref name='LIB:EcoCyc11.1'/>,[[:Category:Complex:vitamin B12 transport system|vitamin B12 transport system]]<ref name='LIB:EcoCyc11.1'/>
Component of [[:Category:Complex:TonB energy transducing system|TonB energy transducing system]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:Outer Membrane Ferric Citrate Transport System|Outer Membrane Ferric Citrate Transport System]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:Outer Membrane Ferrichrome Transport System|Outer Membrane Ferrichrome Transport System]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:Outer Membrane Ferric Enterobactin Transport System|Outer Membrane Ferric Enterobactin Transport System]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:vitamin B12 outer membrane transport complex|vitamin B12 outer membrane transport complex]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:ferric dicitrate uptake system|ferric dicitrate uptake system]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:ferrichrome uptake system|ferrichrome uptake system]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:Ferric Enterobactin Transport System|Ferric Enterobactin Transport System]]<ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:vitamin B12 transport system|vitamin B12 transport system]]<ref name='LIB:EcoCyc11.1'/>


Uptake of enterochelin; resistance or sensitivity to colicins; similarity with TolR<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''membrane spanning protein in TonB-ExbB-ExbD complex<ref name='LIB:Riley_2006'/>, B3005<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ExbD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2998, JW2973, b3005''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:exbD|exbD]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:exbBD|exbBD]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:exbD|exbD]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:exbBD|exbBD]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=exbD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10272]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000266&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=exbD&loc=MG1655%3A3149265..3148840,W3110%3A3149899..3149474,DH10B%3A3247010..3246585,REL606%3A3085415..3084990,BW2952%3A3035988..3036413]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3035988&end=3036413&gene=exbD&aa=mamhlnenlddngemhdinvtpfidvmlvlliifmvaaplatvdvkvnlpaststpqprpekpvylsvkadnsmfigndpvtdetmitalnaltegkkdttiffradktvdyetlmkvmdtlhqagylkiglvgeetakak]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=exbD+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=exbD]]&nbsp;&nbsp;


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Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

exbD

Gene Synonym(s)

ECK2998, b3005, JW2973[1], JW2973

Product Desc.

ExbD uptake of enterochelin; tonB-dependent uptake of B colicins[2][3];

Component of TonB energy transducing system[3]; Outer Membrane Ferric Citrate Transport System[3]; Outer Membrane Ferrichrome Transport System[3]; Outer Membrane Ferric Enterobactin Transport System[3]; vitamin B12 outer membrane transport complex[3]; ferric dicitrate uptake system[3]; ferrichrome uptake system[3]; Ferric Enterobactin Transport System[3]; vitamin B12 transport system[3]

Uptake of enterochelin; resistance or sensitivity to colicins; similarity with TolR[4]

Product Synonyms(s)

membrane spanning protein in TonB-ExbB-ExbD complex[1], B3005[2][1], ExbD[2][1] , ECK2998, JW2973, b3005

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): exbD[2], exbBD[2]

Regulation/Activity
Quick Links



        

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Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.00 3.01 3.02 3.03 3.04 3.05 3.06 3.07 3.08 3.09 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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