pbpG:Quickview: Difference between revisions

Latest revision as of 21:47, 27 May 2013

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Quickview

Gene

Standard Name	pbpG
Gene Synonym(s)	ECK2127, b2134, JW5355, yohB^[1], yohB
Product Desc.	penicillin-binding protein 7^[2]^[3] Penicillin-binding proteins PBP7 and PBP8; murein meso-DAP-alanine DD endopeptidase, periplasmic; uniquely binds beta-lactam penems, lysing non-growing cells; mutant has biofilm defect^[4]
Product Synonyms(s)	D-alanyl-D-alanine endopeptidase^[1], B2134^[2]^[1], YohB^[2]^[1], PbpG^[2]^[1] , ECK2127, JW5355, yohB, b2134
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): pbpG^[2]
Regulation/Activity
Quick Links
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Notes

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PBP8 is an artifactual OmpT-cleaved proteolytic degradation product of PBP7. PBP7 and PBP8 are also referred to as PBP8a and PBP8b. Earlier conventions had the PBP7 amd PBP8 names reversed.^[4]

References

[back to top]

↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 ^2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoGene-4] 4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

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[2]

[3]

[4]

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 <noinclude>{{TabsTop}}
 {{Tab On|Quickview|pbpG}}{{Tab|Gene|pbpG}}{{Tab|Gene Product(s)|pbpG}}{{Tab|Expression|pbpG}}{{Tab|Evolution|pbpG}}{{Tab|On One Page|pbpG}}{{TabsBottom}}
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+{|   id="R49aeef3a02956"  class=" tableEdit New_Quickview_Table"
 |-
-!{{table_heading_style}} |Gene Name
+!align=left {{table_heading_style}} |Standard Name
-|
+||
-[[pbpG:Gene|''pbpG]]'' (synonyms: ''ECK2127, b2134, JW5355, yohB'')<ref name='LIB:Riley_2006'/>
+''pbpG''
 |-
-!{{table_heading_style}} |Product(s)
+!align=left {{table_heading_style}} |Gene Synonym(s)
-|
+||
-[[pbpG:Gene_Product(s)|PbpG product]]<ref name='LIB:Riley_2006'/>: D-alanyl-D-alanine endopeptidase<ref name='LIB:Riley_2006'/>, B2134<ref name='LIB:EcoCyc10.6'/>, YohB<ref name='LIB:EcoCyc10.6'/>, PbpG<ref name='LIB:EcoCyc10.6'/>
+''ECK2127, b2134, JW5355, yohB''<ref name='LIB:Riley_2006'/>, yohB''
 |-
-!{{table_heading_style}} |Description
+!align=left {{table_heading_style}} |Product Desc.
-|
+||
 penicillin-binding protein 7<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+Penicillin-binding proteins PBP7 and PBP8; murein meso-DAP-alanine DD endopeptidase, periplasmic; uniquely binds beta-lactam penems, lysing non-growing cells; mutant has biofilm defect<ref name='LIB:EcoGene'/>
+|-
+!align=left {{table_heading_style}} |Product Synonyms(s)
+||
+''D-alanyl-D-alanine endopeptidase<ref name='LIB:Riley_2006'/>, B2134<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YohB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PbpG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2127, JW5355, yohB, b2134''
+|-
+!align=left {{table_heading_style}} |Function from GO
+||
+<GO_nr />
 |-
-!{{table_heading_style}} |Knock-Out Phenotype
+!align=left {{table_heading_style}} |Knock-Out Phenotype
-|
+||
 |-
-!{{table_heading_style}} |Regulation/Expression
+!align=left {{table_heading_style}} |Regulation/Expression
-|
+||
-transcription unit(s): [[:Category:txn_units:pbpG|pbpG]]<ref name='LIB:EcoCyc10.6'/>
+transcription unit(s): [[:Category:Txn_unit:pbpG|pbpG]]<ref name='LIB:EcoCyc10.6'/>
 |-
-!{{table_heading_style}} |Regulation/Activity
+!align=left {{table_heading_style}} |Regulation/Activity
-|
+||
 |-
-|colspan='2'|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..H469f9089bce85&page=&pagename={{FULLPAGENAMEE}} edit table]
+!align=left {{table_heading_style}} |Quick Links
+||
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=pbpG&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12015]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001933&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=pbpG&loc=MG1655%3A2222892..2221960,W3110%3A2228204..2227272,DH10B%3A2313900..2312968,REL606%3A2176108..2175176,BW2952%3A2114443..2115375]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2114443&end=2115375&gene=pbpG&aa=mlimpkfrvslfslalmlavpfapqavaktaaattasqpeiasgsamivdlntnkviysnhpdlvrpiasisklmtamvvldarlpldeklkvdisqtpemkgvysrvrlnseisrkdmlllalmssenraaaslahhypggykafikamnakakslgmnntrfveptglsvhnvstardltklliaskqypligqlsttredmatfsnptytlpfrntnhlvyrdnwniqltktgftnaaghclvmrtvinnkpvalvvmdafgkythfadasrlrtwietgkvmpvpaaalsykkqkaaqmaaagqtaqnd]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=pbpG+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=pbpG]]&nbsp;&nbsp;
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+{{Quickview_table_help}}
 <protect><!--Quickview_notes--></protect>
-==Notes==
+===Notes===
+{{BacktoTop}}
+PBP8 is an artifactual OmpT-cleaved proteolytic degradation product of PBP7.  PBP7 and PBP8 are also referred to as PBP8a and PBP8b.  Earlier conventions had the PBP7 amd PBP8 names reversed.<ref name='LIB:EcoGene'/>
 <noinclude>
 ==References==
+{{BacktoTop}}
 <references/>
 </noinclude>

pbpG:Quickview: Difference between revisions

Latest revision as of 21:47, 27 May 2013

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