tomB:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[tomB:Gene|''tomB]]'' (synonyms: ''[[tomB:Gene_Product(s)|YbaJ product]]<ref name='LIB:Riley_2006'/>: predicted protein product, B0461 product, ybaJ'')<ref name='LIB:Riley_2006'/>
''tomB''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[tomB:Gene_Product(s)|YbaJ product]]<ref name='LIB:Riley_2006'/>: predicted protein product, B0461 product, ybaJ product
''ECK0455, b0461, JW0450'', ybaJ<ref name='LIB:Riley_2006'/>, JW0450, ybaJ''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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predicted protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
predicted protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
 
Identified initially as upregulated 37-fold in biofilms<ref name='PMID:14727089'/> and shown to influence biofilm formation<ref name='PMID:16317765'/>.
 
Toxin overexpression modulator: antitoxin for toxin Hha<ref name='PMID:18545668'/>.


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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted protein<ref name='LIB:Riley_2006'/>, B0461<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaJ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0455, JW0450, ybaJ, b0461''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:hha|hha]]<ref name='LIB:EcoCyc10.6'/>
 
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!align=left {{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=tomB&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12429]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002285&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=tomB&loc=MG1655%3A479932..479558,W3110%3A479932..479558,BW2952%3A382317..382691]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=382317&end=382691&gene=tomB&aa=mdeyspkrhdiaqlkflcetlyhdclanleesnhgwvndptsainlqlneliehiatfalnykikynednklieqideylddtfmlfssyginmqdlqkwrksgnrlfrcfvnatkenpaslsc]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=tomB+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=tomB]]&nbsp;&nbsp;


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Latest revision as of 21:53, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

tomB

Gene Synonym(s)

ECK0455, b0461, JW0450, ybaJ[1], JW0450, ybaJ

Product Desc.

predicted protein[2][3]

Identified initially as upregulated 37-fold in biofilms[4] and shown to influence biofilm formation[5].

Toxin overexpression modulator: antitoxin for toxin Hha[6].

Product Synonyms(s)

predicted protein[1], B0461[2][1], YbaJ[2][1] , ECK0455, JW0450, ybaJ, b0461

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ Ren, D et al. (2004) Gene expression in Escherichia coli biofilms. Appl. Microbiol. Biotechnol. 64 515-24 PubMed
  5. ↑ Barrios, AF et al. (2006) Hha, YbaJ, and OmpA regulate Escherichia coli K12 biofilm formation and conjugation plasmids abolish motility. Biotechnol. Bioeng. 93 188-200 PubMed
  6. ↑ García-Contreras, R et al. (2008) Protein translation and cell death: the role of rare tRNAs in biofilm formation and in activating dormant phage killer genes. PLoS ONE 3 e2394 PubMed
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