yeeZ:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
imported>WikiEntryBot
Automated import of articles
 
touch
 
(12 intermediate revisions by 3 users not shown)
Line 1: Line 1:
<!--PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE, YOU'RE PROBABLY IN THE WRONG PLACE-->
<!--
***************************************************************************************************************************************************
*
*
*              PLEASE EDIT FROM THE SECTION OR TABLE EDIT LINKS...IF YOU SEE THIS MESSAGE,
*                            YOU'RE PROBABLY IN THE WRONG PLACE
*
*
***************************************************************************************************************************************************
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}
<noinclude>{{TabsTop}}
{{Tab|Quickview|yeeZ}}{{Tab|Gene|yeeZ}}{{Tab|Gene Product(s)|yeeZ}}{{Tab|Expression|yeeZ}}{{Tab On|Evolution|yeeZ}}{{Tab|On One Page|yeeZ}}{{TabsBottom}}
{{Tab|Quickview|yeeZ}}{{Tab|Gene|yeeZ}}{{Tab|Gene Product(s)|yeeZ}}{{Tab|Expression|yeeZ}}{{Tab On|Evolution|yeeZ}}{{Tab|On One Page|yeeZ}}{{TabsBottom}}
Line 12: Line 21:
</noinclude>
</noinclude>
==Homologs in Other Organisms==
==Homologs in Other Organisms==
<!--box uid=421aa90e079fa326b6494f812ad13e79..A46a07c8331dd8-->
{{BacktoTop}}
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<!--box uid=421aa90e079fa326b6494f812ad13e79.48005.E46abcf755bd85-->
{|class = 'sortable' {{Prettytable}} id='89681'
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|  id="E46abcf755bd85"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
|
|
''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
Line 24: Line 39:
|
|
From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
|
''Shigella flexneri''   
''Shigella flexneri''   
Line 31: Line 46:
|
|
From SHIGELLACYC  
From SHIGELLACYC  
|-class='sortbottom'
|-
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..A46a07c8331dd8&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|
''E. coli'' O157
|
Z3178
|
From ECOO157CYC
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.48005.E46abcf755bd85&page=48005&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..A46a07c8331dd8-->
<!--box uid=421aa90e079fa326b6494f812ad13e79.48005.E46abcf755bd85-->
{{Evolution_homologs_table_help}}


===Do-It-Yourself Web Tools===
<protect><!--Families_notes--></protect>
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416520&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
 
<protect><!--Homology_notes--></protect>
===Notes===
===Notes===


==Families==
==Families==
<!--box uid=421aa90e079fa326b6494f812ad13e79..A46a07c8331dd8-->
{{BacktoTop}}
<!--*** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. *** -->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.48005.Z4c604f3ddabfc-->
{|class = 'sortable' {{Prettytable}} id='89681'
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->{{Evolution_families_table_help}}
{|  id="Z4c604f3ddabfc"  class=" tableEdit Evolution_families_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Database!!Accession!!Notes
|-
|-  
|
|
''Arabidopsis thaliana'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
* AT1G19690 (score: 1.000; bootstrap: 100%)
[http://pfam.janelia.org/family/PF01370 PF01370  NAD dependent epimerase/dehydratase family]
|
|
From Inparanoid:20070104
   
|-
 
|
|- class="tableEdit_footer"
''Shigella flexneri''  
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.48005.Z4c604f3ddabfc&page=48005&pagename={{FULLPAGENAMEE}}&type=0&template=Evolution_families_table edit table]</span> || ||
|
S2198
|
From SHIGELLACYC
|-
|
''E. coli'' O157
|
Z3178
|
From ECOO157CYC
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..A46a07c8331dd8&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79..A46a07c8331dd8-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.48005.Z4c604f3ddabfc--></protect>
{{Evolution_families_table_help}}
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===




==Links==
==Links==
{{Evolution_links_default}}
{{BacktoTop}}
<!--box uid=421aa90e079fa326b6494f812ad13e79.48005.T46a8166732430-->
<!--
******************************************************************************************
*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
****************************************************************************************** -->
{|  id="T46a8166732430"  class=" tableEdit Links_table" 
|- {{table_heading_style}}
!|Name!!URL!!Comments
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.48005.T46a8166732430&page=48005&pagename={{FULLPAGENAMEE}}&type=0&template=Links_table edit table]</span> || ||
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.48005.T46a8166732430-->
 
 
==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 20:36, 16 August 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT1G19690 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

S2198

From SHIGELLACYC

E. coli O157

Z3178

From ECOO157CYC

edit table


Notes

Families

[back to top]


See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01370 NAD dependent epimerase/dehydratase family


edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=yeeZ:Evolution&oldid=1300417"