zraR:Quickview: Difference between revisions

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{|   id="B49b036e66f0f5" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[zraR:Gene|''zraR]]'' (synonyms: ''ECK3996, b4004, JW3968, hydG'')<ref name='LIB:Riley_2006'/>
''zraR''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[zraR:Gene_Product(s)|ZraR product, ZraR product]]<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>: B4004 product, HydG product, transcriptional regulatory protein HydG product, unphosphorylated transcriptional regulatory protein HydG product, unmodified transcriptional regulatory protein HydG product
''ECK3996, b4004, JW3968, hydG''<ref name='LIB:Riley_2006'/>, hydG''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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ZraR transcriptional activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
ZraR transcriptional activator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Two component response regulator for zraP; responsive to Zn(2+) and Pb(2+); autoregulated; regulation of Hyd-3 activity is probably due to crosstalk of overexpressed protein<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator <ref name='LIB:Riley_2006'/>, sigma54 interaction protein <ref name='LIB:Riley_2006'/>, B4004 <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HydG <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, transcriptional regulatory protein HydG-P<SUP>asp</SUP> <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, phospho-HydG <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, modified transcriptional regulatory protein HydG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, phosphorylated transcriptional regulatory protein HydG <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ZraR-phosphate <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, positive DNA-binding transcriptional regulator for zraP expression, response regulator in two-component reguatory system with ZraS <ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3996, hydG, JW3968, b4004''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:zraSR|zraSR]]<ref name='LIB:EcoCyc10.6'/>, hydHG  
transcription unit(s): [[:Category:Txn_unit:zraSR|zraSR]]<ref name='LIB:EcoCyc10.6'/>, hydHG  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=zraR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10482]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000475&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=zraR&loc=MG1655%3A4201343..4202668,W3110%3A3433361..3432036,REL606%3A4182905..4184230,DH10B%3A4301039..4302364,BW2952%3A4091023..4092348]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4091023&end=4092348&gene=zraR&aa=mthdnidilvvdddishctilqallrgwgynvalansgrqaleqvreqvfdlvlcdvrmaemdgiatlkeikalnpaipvlimtayssvetavealktgaldylikpldfdnlqatlekalahthsidaetpavtasqfgmvgkspamqhllseialvapseatvlihgdsgtgkelvaraihassarsekplvtlncaalneslleselfghekgaftgadkrregrfveadggtlfldeigdispmmqvrllraiqerevqrvgsnqiisvdvrliaathrdlaaevnagrfrqdlyyrlnvvaievpslrqrredipllaghflqrfaernrkavkgftpqamdllihydwpgnirelenaveravvlltgeyiserelplaiastpiplgqsqdiqplvevekevilaalektggnkteaarqlgitrktllaklsr]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=zraR+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=zraR]]&nbsp;&nbsp;


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<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
The N-terminal sequencing of overexpressed protein showed that the fMet is not clipped (Leonhartsberger et al. 2001. However, natural RBS was not used, so it is not included in the Verified set, although this is almost certainly the correct in vivo start site.<ref name='LIB:EcoGene'/>




Latest revision as of 21:39, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

zraR

Gene Synonym(s)

ECK3996, b4004, JW3968, hydG[1], hydG

Product Desc.

ZraR transcriptional activator[2][3]

Two component response regulator for zraP; responsive to Zn(2+) and Pb(2+); autoregulated; regulation of Hyd-3 activity is probably due to crosstalk of overexpressed protein[4]

Product Synonyms(s)

fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator [1], sigma54 interaction protein [1], B4004 [2][1], HydG [2][1], transcriptional regulatory protein HydG-Pasp [2][1], phospho-HydG [2][1], modified transcriptional regulatory protein HydG[2][1], phosphorylated transcriptional regulatory protein HydG [2][1], ZraR-phosphate [2][1], positive DNA-binding transcriptional regulator for zraP expression, response regulator in two-component reguatory system with ZraS [2][1] , ECK3996, hydG, JW3968, b4004

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): zraSR[2], hydHG

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


The N-terminal sequencing of overexpressed protein showed that the fMet is not clipped (Leonhartsberger et al. 2001. However, natural RBS was not used, so it is not included in the Verified set, although this is almost certainly the correct in vivo start site.[4]



References

[back to top]


  1. ↑ 1.00 1.01 1.02 1.03 1.04 1.05 1.06 1.07 1.08 1.09 1.10 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.00 2.01 2.02 2.03 2.04 2.05 2.06 2.07 2.08 2.09 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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