bcsZ:Quickview: Difference between revisions

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{|   id="J49aee10e5bde5" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[bcsZ:Gene|''bcsZ]]'' (synonyms: ''ECK3516, b3531, JW3499, yhjM'')<ref name='LIB:Riley_2006'/>
''bcsZ''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[bcsZ:Gene_Product(s)|BcsZ product]]<ref name='LIB:Riley_2006'/>: endo-1,4-D-glucanase product, B3531 product, YhjM product
''ECK3516, b3531, JW3499, yhjM''<ref name='LIB:Riley_2006'/>, bcsC, yhjM''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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endo-1,4-D-glucanase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
endo-1,4-D-glucanase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Endo-1,4-D-glucanase; breaks down carboxymethylcellulose; periplasmic cellulase<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''endo-1,4-D-glucanase<ref name='LIB:Riley_2006'/>, B3531<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, BcsZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhjM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , bcsC, ECK3516, JW3499, yhjM, b3531''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:bcsABZC|bcsABZC]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:bcsBZ|bcsBZ]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:bcsABZC|bcsABZC]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:bcsBZ|bcsBZ]]<ref name='LIB:EcoCyc10.6'/>  
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|-
!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=bcsZ&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12258]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002139&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=bcsZ&loc=MG1655%3A3688284..3687178,W3110%3A3950154..3951260,REL606%3A3619753..3618647,DH10B%3A3786029..3784923,BW2952%3A3575672..3576778]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3575672&end=3576778&gene=bcsZ&aa=mnvlrsgivtmlllaafsvqaactwpaweqfkkdyisqegrvidpsdarkittsegqsygmfsalaandraafdnildwtqnnlaqgslkerlpawlwgkkenskwevldsnsasdgdvwmawslleagrlwkeqrytdigsallkriareevvtvpglgsmllpgkvgfaednswrfnpsylpptlaqyftrfgapwttlretnqrllletapkgfspdwvryekdkgwqlkaektlissydairvymwvgmmpdsdpqkarmlnrfkpmatftekngyppekvdvatgkaqgkgpvgfsaamlpflqnrdaqavqrqrvadnfpgsdayynyvltlfgqgwdqhrfrfstkgellpdwgqecansh]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=bcsZ+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=bcsZ]]&nbsp;&nbsp;


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{{Quickview_table_help}}
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
First 21 aa are predicted to be a type I signal peptide. Probable false positive lipoprotein prediction; soluble periplasmic.<ref name='LIB:EcoGene'/>




Latest revision as of 21:52, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

bcsZ

Gene Synonym(s)

ECK3516, b3531, JW3499, yhjM[1], bcsC, yhjM

Product Desc.

endo-1,4-D-glucanase[2][3]

Endo-1,4-D-glucanase; breaks down carboxymethylcellulose; periplasmic cellulase[4]

Product Synonyms(s)

endo-1,4-D-glucanase[1], B3531[2][1], BcsZ[2][1], YhjM[2][1] , bcsC, ECK3516, JW3499, yhjM, b3531

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): bcsABZC[2], bcsBZ[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


First 21 aa are predicted to be a type I signal peptide. Probable false positive lipoprotein prediction; soluble periplasmic.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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