rsmF:Quickview: Difference between revisions

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{|   id="F49b024035bc14" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[rsmF:Gene|''rsmF]]'' (synonyms: ''yebU, ECK1834, b1835, JW5301'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''rsmF''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[rsmF:Gene_Product(s)|YebU product]]<ref name='LIB:Riley_2006'/>: predicted methyltransferase product, B1835 product, RsmF product
''yebU, ECK1834, b1835, JW5301''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, JW5301''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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16S rRNA m<sup>5</sup>C1407 methyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
16S rRNA m<sup>5</sup>C1407 specific methyltransferase<ref name='PMID:16678201'/><ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>. Inactivation of the yebU gene leads to loss of methylation at C1407 in 16
S rRNA, but does not interfere with methylation at C1962 in 23 S rRNA.
Purified recombinant YebU protein retains its specificity for C1407 in vitro,
and methylates 30 S subunits (but not naked 16 S rRNA or 70 S ribosomes)
isolated from yebU knockout strains.<ref name='PMID:16678201'/>.  Andersen and Douthwaite suggest that a more
appropriate designation for yebU would be the rRNA small subunit
methyltransferase gene rsmF.


16S rRNA m(5)C1407 methyltransferase, SAM-dependent<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted methyltransferase<ref name='LIB:Riley_2006'/>, B1835<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YebU<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RsmF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1834, JW5301, yebU, b1835''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yebU|yebU]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yebU|yebU]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rsmF&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7008]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003595&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rsmF&loc=MG1655%3A1918247..1919686,W3110%3A1921937..1923376,REL606%3A1898800..1900239,BW2952%3A1810306..1811745]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1810306&end=1811745&gene=rsmF&aa=mlvaqhtvyfpdafltqmreampstlsfddflaacqrplrrsirvntlkisvadflqltapygwtltpipwceegfwierdnedalplgstaehlsglfyiqeassmlpvaalfadgnapqrvmdvaaapgskttqisarmnnegailanefsasrvkvlhanisrcgisnvalthfdgrvfgaavpemfdailldapcsgegvvrkdpdalknwspesnqeiaatqrelidsafhalrpggtlvystctlnqeeneavclwlketypdaveflplgdlfpgankalteegflhvfpqiydcegffvarlrktqaipalpapkykvgnfpfspvkdreagqirqaatgvglnwdenlrlwqrdkelwlfpvgiealigkvrfsrlgiklaethnkgyrwqheavialaspdnmnafeltpqeaeewyrgrdvypqaapvaddvlvtfqhqpiglakrigsrlknsyprelvrdgklftgna]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rsmF+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rsmF]]&nbsp;&nbsp;


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<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}




Latest revision as of 21:46, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rsmF

Gene Synonym(s)

yebU, ECK1834, b1835, JW5301[1][2], JW5301

Product Desc.

16S rRNA m5C1407 specific methyltransferase[3][2][4]. Inactivation of the yebU gene leads to loss of methylation at C1407 in 16 S rRNA, but does not interfere with methylation at C1962 in 23 S rRNA. Purified recombinant YebU protein retains its specificity for C1407 in vitro, and methylates 30 S subunits (but not naked 16 S rRNA or 70 S ribosomes) isolated from yebU knockout strains.[3]. Andersen and Douthwaite suggest that a more appropriate designation for yebU would be the rRNA small subunit methyltransferase gene rsmF.

16S rRNA m(5)C1407 methyltransferase, SAM-dependent[5]

Product Synonyms(s)

predicted methyltransferase[1], B1835[2][1], YebU[2][1], RsmF[2][1] , ECK1834, JW5301, yebU, b1835

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yebU[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 Andersen, NM & Douthwaite, S (2006) YebU is a m5C methyltransferase specific for 16 S rRNA nucleotide 1407. J. Mol. Biol. 359 777-86 PubMed
  4. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  5. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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