gnsB:Quickview: Difference between revisions

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{|   id="Z49aee7e142384" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[gnsB:Gene|''gnsB]]'' (synonyms: ''ECK1544, b1550, JW5253, ydfY'')<ref name='LIB:Riley_2006'/>
''gnsB''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[gnsB:Gene_Product(s)|GnsB product]]<ref name='LIB:Riley_2006'/>: Qin prophage; predicted protein product, B1550 product, YdfY product
''ECK1544, b1550, JW5253, ydfY''<ref name='LIB:Riley_2006'/>, ydfY''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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Qin prophage; predicted protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
Qin prophage; predicted protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Multicopy suppressor of secG(Cs) and fabA6(Ts), Qin prophage; overexpression increases unsaturated fatty acid content of phospholipids; gnsA paralog<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''Qin prophage; predicted protein<ref name='LIB:Riley_2006'/>, B1550<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GnsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdfY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1544, JW5253, ydfY, b1550''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:gnsB|gnsB]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:gnsB|gnsB]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=gnsB&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6823]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003412&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=gnsB&loc=MG1655%3A1635806..1635633,W3110%3A1639496..1639323,DH10B%3A1725431..1725258,REL606%3A1609973..1609800,BW2952%3A1527692..1527865]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1527692&end=1527865&gene=gnsB&aa=mmnienlktkaeadiseyitkkiielkkktgkevtsiqftarekmtglesydvkinli]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=gnsB+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=gnsB]]&nbsp;&nbsp;


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===Notes===
===Notes===
{{BacktoTop}}
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The Escherichia coli CFT073 gnsB ortholog is annotated as an 88 amino acid protein due to extension of N-terminus. However, homology does not extend into upstream region and K-12 has an in-frame stop in N-terminal extension region. Therefore GnsB of CFT073 is probably also 57 aa long. Conservation with GnsA paralog and presence of excellent gnsB RBS also supports this conclusion.  ALT_INIT of -1 is indicated to allow acceptable spacing between the ATG and the RBS.<ref name='LIB:EcoGene'/>




Latest revision as of 21:49, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

gnsB

Gene Synonym(s)

ECK1544, b1550, JW5253, ydfY[1], ydfY

Product Desc.

Qin prophage; predicted protein[2][3]

Multicopy suppressor of secG(Cs) and fabA6(Ts), Qin prophage; overexpression increases unsaturated fatty acid content of phospholipids; gnsA paralog[4]

Product Synonyms(s)

Qin prophage; predicted protein[1], B1550[2][1], GnsB[2][1], YdfY[2][1] , ECK1544, JW5253, ydfY, b1550

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): gnsB[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


The Escherichia coli CFT073 gnsB ortholog is annotated as an 88 amino acid protein due to extension of N-terminus. However, homology does not extend into upstream region and K-12 has an in-frame stop in N-terminal extension region. Therefore GnsB of CFT073 is probably also 57 aa long. Conservation with GnsA paralog and presence of excellent gnsB RBS also supports this conclusion. ALT_INIT of -1 is indicated to allow acceptable spacing between the ATG and the RBS.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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