sucB:Quickview: Difference between revisions

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{|   id="W49b025eb51001" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[sucB:Gene|''sucB]]'' (synonyms: ''ECK0715, b0727, JW0716, lys, met'')<ref name='LIB:Riley_2006'/>
''sucB''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[sucB:Gene_Product(s)|SucB product, SucB product]]<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>: B0727 product
''ECK0715, b0727, JW0716, lys, met''<ref name='LIB:Riley_2006'/>
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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SucB-S-succinyldihydrolipoate<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
SucB-lipoate<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


SucB-S-succinyldihydrolipoate
2-oxoglutarate dehydrogenase, E2 component; dihydrolipoamide succinyltransferase; acid-inducible; yields succinyl-CoA and CO(2)<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''dihydrolipoyl transsuccinase<ref name='LIB:Riley_2006'/>, B0727<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0715, JW0716, b0727''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:sdhCDAB-sucABCD|sdhCDAB-sucABCD]]<ref name='LIB:EcoCyc10.6'/>, OP00142, sdhCDAB, [[:Category:Txn_unit:sucABCD|sucABCD]]<ref name='LIB:EcoCyc10.6'/>, OP00143, suc  
transcription unit(s): [[:Category:Txn_unit:sdhCDAB-sucABCD|sdhCDAB-sucABCD]]<ref name='LIB:EcoCyc10.6'/>, OP00142, sdhCDAB, [[:Category:Txn_unit:sucABCD|sucABCD]]<ref name='LIB:EcoCyc10.6'/>, OP00143, suc  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=sucB&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10980]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000969&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=sucB&loc=MG1655%3A760745..761962,W3110%3A761944..763161,DH10B%3A813337..814554,REL606%3A742313..743530,BW2952%3A663505..664722]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=663505&end=664722&gene=sucB&aa=mssvdilvpdlpesvadatvatwhkkpgdavvrdevlveietdkvvlevpasadgildavledegttvtsrqilgrlregnsagketsakseekastpaqrqqasleeqnndalspairrllaehnldasaikgtgvggrltredvekhlakapakesapaaaapaaqpalaarsekrvpmtrlrkrvaerlleaknstamlttfnevnmkpimdlrkqygeafekrhgirlgfmsfyvkavvealkrypevnasidgddvvyhnyfdvsmavstprglvtpvlrdvdtlgmadiekkikelavkgrdgkltvedltggnftitnggvfgslmstpiinppqsailgmhaikdrpmavngqveilpmmylalsydhrlidgresvgflvtikelledptrllldv]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=sucB+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=sucB]]&nbsp;&nbsp;


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===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
sucAB is a synthetic lethal with sucCD. Residues 104-153 is the E3(Lpd) component binding domain, called the peripheral subunit binding domain (PSBD). When the isolated 50 aa PSBD domain is produced as a protein it is called BBL, which is structuerd at low temperature and may be an example of a downhill protein folding (Packman, 1986; Garcia-Mira, 2002). This controversial topic, centered around experiments with a naphthyl-alanine derivative of BBL termed Naf-BBL, has a topic page with additional citations.<ref name='LIB:EcoGene'/>




Latest revision as of 21:45, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

sucB

Gene Synonym(s)

ECK0715, b0727, JW0716, lys, met[1]

Product Desc.

SucB-lipoate[2][3]

SucB-S-succinyldihydrolipoate

2-oxoglutarate dehydrogenase, E2 component; dihydrolipoamide succinyltransferase; acid-inducible; yields succinyl-CoA and CO(2)[4]

Product Synonyms(s)

dihydrolipoyl transsuccinase[1], B0727[2][1] , ECK0715, JW0716, b0727

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): sdhCDAB-sucABCD[2], OP00142, sdhCDAB, sucABCD[2], OP00143, suc

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


sucAB is a synthetic lethal with sucCD. Residues 104-153 is the E3(Lpd) component binding domain, called the peripheral subunit binding domain (PSBD). When the isolated 50 aa PSBD domain is produced as a protein it is called BBL, which is structuerd at low temperature and may be an example of a downhill protein folding (Packman, 1986; Garcia-Mira, 2002). This controversial topic, centered around experiments with a naphthyl-alanine derivative of BBL termed Naf-BBL, has a topic page with additional citations.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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