ydjK:Evolution: Difference between revisions

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{{Tab|Quickview|ydjK}}{{Tab|Gene|ydjK}}{{Tab|Gene Product(s)|ydjK}}{{Tab|Expression|ydjK}}{{Tab On|Evolution|ydjK}}{{Tab|On One Page|ydjK}}{{TabsBottom}}
{{Tab|Quickview|ydjK}}{{Tab|Gene|ydjK}}{{Tab|Gene Product(s)|ydjK}}{{Tab|Expression|ydjK}}{{Tab On|Evolution|ydjK}}{{Tab|On One Page|ydjK}}{{TabsBottom}}
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==Homologs in Other Organisms==
==Homologs in Other Organisms==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="R46abca05b3f7d"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Gallus gallus''   
''Gallus gallus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
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Z2813
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From ECOO157CYC
 
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416289&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416289&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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==Families==
==Families==
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00083 PFAM:PF00083]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=103473 SUPERFAMILY:103473]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF07690 PF07690  Major Facilitator Superfamily]
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|-
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[[EcoCyc]]
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EcoCyc:G6962
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13487
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120003550
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3260
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0005910
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==Links==
==Links==
{{Evolution_links_default}}
{{BacktoTop}}
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==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Schizosaccharomyces pombe ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Schizosaccharomyces pombe ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:33, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Bos taurus

  • ENSBTAP00000018132 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000030050 (score: 0.612)
  • ENSBTAP00000013515 (score: 0.426)
  • ENSBTAP00000004197 (score: 0.337)
  • ENSBTAP00000030783 (score: 0.325)
  • ENSBTAP00000000672 (score: 0.298)
  • ENSBTAP00000034822 (score: 0.292)
  • ENSBTAP00000000676 (score: 0.237)
  • ENSBTAP00000018139 (score: 0.215)
  • ENSBTAP00000024981 (score: 0.174)
  • ENSBTAP00000011256 (score: 0.170)
  • ENSBTAP00000004059 (score: 0.166)
  • ENSBTAP00000008336 (score: 0.159)
  • ENSBTAP00000025892 (score: 0.157)
  • ENSBTAP00000037489 (score: 0.150)
  • ENSBTAP00000011136 (score: 0.138)
  • ENSBTAP00000025016 (score: 0.124)
  • ENSBTAP00000032068 (score: 0.079)
  • ENSBTAP00000034716 (score: 0.069)
  • ENSBTAP00000030060 (score: 0.056)
  • ENSBTAP00000036264 (score: 0.050)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037754 (score: 1.000; bootstrap: 70%)
  • WBGene00028224 (score: 0.537)
  • WBGene00035744 (score: 0.288)
  • WBGene00040003 (score: 0.220)
  • WBGene00040483 (score: 0.194)
  • WBGene00040251 (score: 0.124)
  • WBGene00034147 (score: 0.121)
  • WBGene00040431 (score: 0.106)
  • WBGene00040001 (score: 0.081)
  • WBGene00032170 (score: 0.067)
  • WBGene00037897 (score: 0.056)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010772 (score: 1.000; bootstrap: 77%)
  • WBGene00020445 (score: 0.536)
  • WBGene00008084 (score: 0.519)
  • WBGene00044455 (score: 0.285)
  • WBGene00017751 (score: 0.269)
  • WBGene00008110 (score: 0.193)
  • WBGene00013318 (score: 0.134)
  • WBGene00014127 (score: 0.118)
  • WBGene00008271 (score: 0.102)
  • WBGene00003987 (score: 0.061)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000009674 (score: 1.000; bootstrap: 84%)
  • ENSGALP00000009535 (score: 0.718)
  • ENSGALP00000002531 (score: 0.232)
  • ENSGALP00000024171 (score: 0.152)
  • ENSGALP00000018878 (score: 0.144)
  • ENSGALP00000004550 (score: 0.129)

From Inparanoid:20070104

Oryza gramene

  • Q653R2 (score: 1.000; bootstrap: 67%)
  • Q7XPE1 (score: 0.605)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAPB1E78c (score: 1.000; bootstrap: 53%)

From Inparanoid:20070104

Shigella flexneri

S1563

From SHIGELLACYC

E. coli O157

Z2813

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:103473

Pfam (EcoliWiki Page)

PF07690 Major Facilitator Superfamily

EcoCyc

EcoCyc:G6962

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13487

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003550

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3260

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005910

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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